Strain Fitness in Pseudomonas putida KT2440 around PP_0108

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
113,052	+				-0.7
113,065	-				-0.9
113,065	-				+0.9
113,139	+		PP_5427	0.28	+0.4
113,139	+		PP_5427	0.28	+1.1
113,139	+		PP_5427	0.28	+1.3
113,139	+		PP_5427	0.28	+0.5
113,139	+		PP_5427	0.28	+1.6
113,140	-		PP_5427	0.28	-0.2
113,140	-		PP_5427	0.28	+0.7
113,140	-		PP_5427	0.28	+0.7
113,140	-		PP_5427	0.28	+0.8
113,318	+				-1.3
113,318	+				+1.4
113,318	+				+0.6
113,319	-				-0.5
113,319	-				+0.4
113,323	-				+1.6
113,323	-				+1.3
113,323	-				+0.4
113,323	-				-1.1
113,325	-				-3.8
113,402	+				-1.4
113,402	+				+0.6
113,402	+				-0.1
113,403	-				-1.6
113,403	-				-0.5
113,460	+		PP_0107	0.17	+1.3
113,461	-		PP_0107	0.17	-0.8
113,461	-		PP_0107	0.17	+0.5
113,461	-		PP_0107	0.17	-1.5
113,461	-		PP_0107	0.17	-3.6
113,461	-		PP_0107	0.17	+1.0
113,461	-		PP_0107	0.17	-0.9
113,544	+		PP_0107	0.28	+0.9
113,544	+		PP_0107	0.28	+1.6
113,545	-		PP_0107	0.28	+1.1
113,545	-		PP_0107	0.28	-2.5
113,751	+		PP_0107	0.56	+0.3
113,751	+		PP_0107	0.56	+2.0
113,751	+		PP_0107	0.56	-2.9
113,752	-		PP_0107	0.56	+0.5
113,752	-		PP_0107	0.56	-1.0
113,842	+		PP_0107	0.68	+1.8
113,842	+		PP_0107	0.68	+0.1
113,958	+		PP_0107	0.84	-1.3
114,003	+				-3.3
114,003	+				+0.7
114,010	-				+1.0
114,010	-				+0.3
114,078	+				+0.4
114,079	-				-0.7
114,079	-				+0.4
114,164	-		PP_0108	0.21	+1.2
114,164	-		PP_0108	0.21	+0.3
114,171	+		PP_0108	0.22	+0.8
114,171	+		PP_0108	0.22	+1.3
114,172	-		PP_0108	0.22	-0.6
114,199	+		PP_0108	0.27	+0.8
114,415	+		PP_0108	0.64	+1.4
114,416	-		PP_0108	0.64	+0.9
114,706	+				+0.4
114,707	-				-1.4
114,707	-				+1.3
114,707	-				-0.6
114,707	-				+0.5
114,707	-				-1.0
114,708	+				-3.1
114,757	+		PP_0109	0.11	-0.1
114,757	+		PP_0109	0.11	-0.5
114,868	+		PP_0109	0.22	-0.9
114,869	-		PP_0109	0.22	-1.6
114,968	+		PP_0109	0.31	+1.0
115,002	+		PP_0109	0.34	+0.4
115,002	+		PP_0109	0.34	-1.0
115,002	+		PP_0109	0.34	+0.8
115,003	-		PP_0109	0.34	+0.4
115,003	-		PP_0109	0.34	-0.0
115,065	+		PP_0109	0.40	-1.1
115,065	+		PP_0109	0.40	+1.6
115,220	-		PP_0109	0.54	-0.7
115,324	+		PP_0109	0.64	+1.0
115,594	+		PP_0109	0.89	+2.0