Strain Fitness in Pseudomonas putida KT2440 around PP_0079

Experiment: P. putida PUT 7 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0077 and PP_0079 are separated by 108 nucleotidesPP_0079 and PP_0080 are separated by 121 nucleotidesPP_0080 and PP_0081 are separated by 13 nucleotides PP_0077: PP_0077 - choline-sulfatase, at 87,800 to 89,317 _0077 PP_0079: PP_0079 - putative transcriptional regulator, at 89,426 to 90,325 _0079 PP_0080: PP_0080 - conserved protein of unknown function, at 90,447 to 91,064 _0080 PP_0081: PP_0081 - conserved protein of unknown function, at 91,078 to 91,449 _0081 Position (kb) 89 90 91Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 88.533 kb on + strand, within PP_0077at 88.535 kb on - strand, within PP_0077at 88.536 kb on + strand, within PP_0077at 88.536 kb on + strand, within PP_0077at 88.536 kb on + strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.554 kb on + strand, within PP_0077at 88.579 kb on + strand, within PP_0077at 88.611 kb on + strand, within PP_0077at 88.611 kb on + strand, within PP_0077at 88.611 kb on + strand, within PP_0077at 88.611 kb on + strand, within PP_0077at 88.695 kb on + strand, within PP_0077at 88.725 kb on + strand, within PP_0077at 88.725 kb on + strand, within PP_0077at 88.726 kb on - strand, within PP_0077at 88.726 kb on - strand, within PP_0077at 88.726 kb on - strand, within PP_0077at 88.797 kb on + strand, within PP_0077at 88.797 kb on + strand, within PP_0077at 88.804 kb on - strand, within PP_0077at 88.956 kb on + strand, within PP_0077at 89.058 kb on + strand, within PP_0077at 89.058 kb on + strand, within PP_0077at 89.059 kb on - strand, within PP_0077at 89.067 kb on + strand, within PP_0077at 89.067 kb on + strand, within PP_0077at 89.068 kb on - strand, within PP_0077at 89.106 kb on + strand, within PP_0077at 89.106 kb on + strand, within PP_0077at 89.253 kb on + strandat 89.302 kb on + strandat 89.358 kb on - strandat 89.377 kb on + strandat 89.377 kb on + strandat 89.377 kb on + strandat 89.377 kb on + strandat 89.377 kb on + strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.387 kb on - strandat 89.415 kb on + strandat 89.470 kb on - strandat 89.470 kb on - strandat 89.680 kb on + strand, within PP_0079at 89.789 kb on + strand, within PP_0079at 89.790 kb on - strand, within PP_0079at 90.103 kb on + strand, within PP_0079at 90.103 kb on + strand, within PP_0079at 90.103 kb on + strand, within PP_0079at 90.104 kb on - strand, within PP_0079at 90.104 kb on - strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.110 kb on - strand, within PP_0079at 90.110 kb on - strand, within PP_0079at 90.239 kb on + strandat 90.239 kb on + strandat 90.239 kb on + strandat 90.240 kb on - strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.246 kb on + strandat 90.246 kb on + strandat 90.247 kb on - strandat 90.252 kb on + strandat 90.252 kb on + strandat 90.253 kb on - strandat 90.448 kb on + strandat 90.448 kb on + strandat 90.448 kb on + strandat 90.573 kb on - strand, within PP_0080at 90.595 kb on - strand, within PP_0080at 90.697 kb on + strand, within PP_0080at 90.698 kb on - strand, within PP_0080at 90.698 kb on - strand, within PP_0080at 90.698 kb on - strand, within PP_0080at 90.750 kb on + strand, within PP_0080at 90.750 kb on + strand, within PP_0080at 90.751 kb on - strand, within PP_0080at 90.751 kb on - strand, within PP_0080at 90.753 kb on - strand, within PP_0080at 90.753 kb on - strand, within PP_0080at 90.831 kb on + strand, within PP_0080at 91.113 kb on + strandat 91.114 kb on - strandat 91.136 kb on - strand, within PP_0081at 91.150 kb on + strand, within PP_0081at 91.151 kb on - strand, within PP_0081at 91.151 kb on - strand, within PP_0081at 91.153 kb on + strand, within PP_0081at 91.154 kb on - strand, within PP_0081

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
remove
88,533 + PP_0077 0.48 -0.1
88,535 - PP_0077 0.48 -0.0
88,536 + PP_0077 0.48 -1.4
88,536 + PP_0077 0.48 -1.1
88,536 + PP_0077 0.48 -0.0
88,537 - PP_0077 0.49 +1.7
88,537 - PP_0077 0.49 -0.6
88,537 - PP_0077 0.49 -0.2
88,537 - PP_0077 0.49 -1.4
88,537 - PP_0077 0.49 +0.9
88,554 + PP_0077 0.50 +0.0
88,579 + PP_0077 0.51 +1.5
88,611 + PP_0077 0.53 +0.1
88,611 + PP_0077 0.53 +1.3
88,611 + PP_0077 0.53 +0.5
88,611 + PP_0077 0.53 +1.9
88,695 + PP_0077 0.59 -1.9
88,725 + PP_0077 0.61 +0.1
88,725 + PP_0077 0.61 +1.1
88,726 - PP_0077 0.61 +1.0
88,726 - PP_0077 0.61 -2.6
88,726 - PP_0077 0.61 +0.3
88,797 + PP_0077 0.66 +0.9
88,797 + PP_0077 0.66 +0.6
88,804 - PP_0077 0.66 -0.2
88,956 + PP_0077 0.76 +1.6
89,058 + PP_0077 0.83 -2.1
89,058 + PP_0077 0.83 -1.7
89,059 - PP_0077 0.83 +0.5
89,067 + PP_0077 0.83 -0.6
89,067 + PP_0077 0.83 +1.3
89,068 - PP_0077 0.84 -1.5
89,106 + PP_0077 0.86 +0.8
89,106 + PP_0077 0.86 +0.8
89,253 + -0.0
89,302 + -1.6
89,358 - +0.1
89,377 + +0.0
89,377 + -2.8
89,377 + -0.3
89,377 + -0.9
89,377 + -0.0
89,378 - -0.0
89,378 - +0.4
89,378 - +0.5
89,378 - +0.2
89,378 - -3.3
89,378 - -3.5
89,378 - -0.5
89,387 - -2.6
89,415 + -0.7
89,470 - -1.3
89,470 - +0.1
89,680 + PP_0079 0.28 -0.1
89,789 + PP_0079 0.40 +0.3
89,790 - PP_0079 0.40 -0.3
90,103 + PP_0079 0.75 -1.7
90,103 + PP_0079 0.75 -0.6
90,103 + PP_0079 0.75 -1.9
90,104 - PP_0079 0.75 +0.4
90,104 - PP_0079 0.75 +0.3
90,107 + PP_0079 0.76 -3.5
90,107 + PP_0079 0.76 +1.1
90,107 + PP_0079 0.76 -1.8
90,107 + PP_0079 0.76 +0.7
90,108 - PP_0079 0.76 -2.0
90,108 - PP_0079 0.76 -1.0
90,108 - PP_0079 0.76 -1.1
90,108 - PP_0079 0.76 -1.3
90,108 - PP_0079 0.76 -1.0
90,108 - PP_0079 0.76 +0.9
90,109 + PP_0079 0.76 -0.8
90,109 + PP_0079 0.76 -3.1
90,109 + PP_0079 0.76 -2.4
90,109 + PP_0079 0.76 +0.0
90,109 + PP_0079 0.76 -4.1
90,110 - PP_0079 0.76 -3.1
90,110 - PP_0079 0.76 +0.9
90,239 + +0.3
90,239 + +0.9
90,239 + +0.7
90,240 - -0.6
90,242 + +0.0
90,242 + -1.2
90,242 + -0.7
90,242 + -3.3
90,242 + -1.0
90,242 + -2.1
90,242 + -2.6
90,243 - -1.0
90,243 - -0.2
90,243 - -0.4
90,243 - -0.6
90,243 - +0.6
90,246 + -1.9
90,246 + -0.9
90,247 - -1.1
90,252 + +0.3
90,252 + -3.3
90,253 - -0.6
90,448 + -0.4
90,448 + +0.2
90,448 + +0.1
90,573 - PP_0080 0.20 -2.8
90,595 - PP_0080 0.24 -3.5
90,697 + PP_0080 0.40 -0.8
90,698 - PP_0080 0.41 +1.2
90,698 - PP_0080 0.41 +2.2
90,698 - PP_0080 0.41 -0.0
90,750 + PP_0080 0.49 -0.0
90,750 + PP_0080 0.49 -2.4
90,751 - PP_0080 0.49 +1.3
90,751 - PP_0080 0.49 +0.0
90,753 - PP_0080 0.50 -1.9
90,753 - PP_0080 0.50 +0.8
90,831 + PP_0080 0.62 -1.0
91,113 + -2.3
91,114 - +1.1
91,136 - PP_0081 0.16 +2.0
91,150 + PP_0081 0.19 -1.6
91,151 - PP_0081 0.20 +1.8
91,151 - PP_0081 0.20 -0.4
91,153 + PP_0081 0.20 -1.1
91,154 - PP_0081 0.20 +1.2

Or see this region's nucleotide sequence