Strain Fitness in Pseudomonas putida KT2440 around PP_0031

Experiment: P. putida PUT 7 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0030 and PP_0031 are separated by 57 nucleotidesPP_0031 and PP_0032 are separated by 266 nucleotidesPP_0032 and PP_0033 are separated by 82 nucleotides PP_0030: PP_0030 - metal-sensor histidine kinase, at 33,564 to 34,982 _0030 PP_0031: PP_0031 - hypothetical protein, at 35,040 to 35,627 _0031 PP_0032: PP_0032 - conserved hypothetical protein, at 35,894 to 36,115 _0032 PP_0033: PP_0033 - putative undecaprenyl-glycosyl transferase, at 36,198 to 37,652 _0033 Position (kb) 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1at 34.135 kb on + strand, within PP_0030at 34.135 kb on + strand, within PP_0030at 34.136 kb on - strand, within PP_0030at 34.136 kb on - strand, within PP_0030at 34.695 kb on + strand, within PP_0030at 34.696 kb on - strand, within PP_0030at 34.696 kb on - strand, within PP_0030at 34.696 kb on - strand, within PP_0030at 34.712 kb on + strand, within PP_0030at 34.712 kb on + strand, within PP_0030at 34.712 kb on + strand, within PP_0030at 34.712 kb on + strand, within PP_0030at 34.712 kb on + strand, within PP_0030at 34.712 kb on + strand, within PP_0030at 34.713 kb on - strand, within PP_0030at 34.713 kb on - strand, within PP_0030at 34.713 kb on - strand, within PP_0030at 34.713 kb on - strand, within PP_0030at 34.713 kb on - strand, within PP_0030at 34.725 kb on - strand, within PP_0030at 34.757 kb on + strand, within PP_0030at 34.758 kb on - strand, within PP_0030at 34.797 kb on + strand, within PP_0030at 34.797 kb on + strand, within PP_0030at 34.798 kb on - strand, within PP_0030at 34.980 kb on + strandat 34.999 kb on + strandat 34.999 kb on + strandat 34.999 kb on + strandat 35.090 kb on + strandat 35.091 kb on - strandat 35.091 kb on - strandat 35.094 kb on - strandat 35.140 kb on + strand, within PP_0031at 35.140 kb on + strand, within PP_0031at 35.141 kb on - strand, within PP_0031at 35.141 kb on - strand, within PP_0031at 35.141 kb on - strand, within PP_0031at 35.169 kb on + strand, within PP_0031at 35.169 kb on + strand, within PP_0031at 35.169 kb on + strand, within PP_0031at 35.170 kb on - strand, within PP_0031at 35.170 kb on - strand, within PP_0031at 35.170 kb on - strand, within PP_0031at 35.257 kb on + strand, within PP_0031at 35.257 kb on + strand, within PP_0031at 35.258 kb on - strand, within PP_0031at 35.258 kb on - strandat 35.258 kb on - strand, within PP_0031at 35.297 kb on + strand, within PP_0031at 35.298 kb on - strand, within PP_0031at 35.327 kb on + strand, within PP_0031at 35.327 kb on + strand, within PP_0031at 35.328 kb on - strand, within PP_0031at 35.384 kb on - strand, within PP_0031at 35.616 kb on + strandat 35.617 kb on - strandat 35.617 kb on - strandat 35.797 kb on + strandat 35.860 kb on - strandat 35.877 kb on - strandat 35.877 kb on - strandat 36.094 kb on + strandat 36.199 kb on + strandat 36.327 kb on + strandat 36.327 kb on + strandat 36.327 kb on + strandat 36.328 kb on - strandat 36.328 kb on - strandat 36.328 kb on - strandat 36.328 kb on - strandat 36.376 kb on + strand, within PP_0033at 36.376 kb on + strand, within PP_0033at 36.376 kb on + strand, within PP_0033at 36.376 kb on + strand, within PP_0033at 36.377 kb on - strand, within PP_0033at 36.454 kb on + strand, within PP_0033at 36.455 kb on - strand, within PP_0033at 36.472 kb on + strand, within PP_0033at 36.473 kb on - strand, within PP_0033at 36.473 kb on - strand, within PP_0033at 36.473 kb on - strand, within PP_0033at 36.552 kb on + strand, within PP_0033at 36.553 kb on - strand, within PP_0033at 36.553 kb on - strand, within PP_0033at 36.553 kb on - strand, within PP_0033at 36.565 kb on + strand, within PP_0033

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
remove
34,135 + PP_0030 0.40 +0.2
34,135 + PP_0030 0.40 +0.8
34,136 - PP_0030 0.40 +0.6
34,136 - PP_0030 0.40 -1.0
34,695 + PP_0030 0.80 -0.1
34,696 - PP_0030 0.80 -0.7
34,696 - PP_0030 0.80 -0.3
34,696 - PP_0030 0.80 -0.6
34,712 + PP_0030 0.81 -0.8
34,712 + PP_0030 0.81 -0.4
34,712 + PP_0030 0.81 +0.1
34,712 + PP_0030 0.81 -0.8
34,712 + PP_0030 0.81 +0.7
34,712 + PP_0030 0.81 +1.0
34,713 - PP_0030 0.81 +0.2
34,713 - PP_0030 0.81 +0.9
34,713 - PP_0030 0.81 -0.3
34,713 - PP_0030 0.81 +0.0
34,713 - PP_0030 0.81 +1.3
34,725 - PP_0030 0.82 -0.0
34,757 + PP_0030 0.84 +0.6
34,758 - PP_0030 0.84 -3.0
34,797 + PP_0030 0.87 -0.7
34,797 + PP_0030 0.87 +1.0
34,798 - PP_0030 0.87 +0.2
34,980 + -1.6
34,999 + +1.3
34,999 + +0.2
34,999 + -1.1
35,090 + +0.4
35,091 - -1.6
35,091 - -3.1
35,094 - +1.0
35,140 + PP_0031 0.17 +0.1
35,140 + PP_0031 0.17 -1.4
35,141 - PP_0031 0.17 -0.9
35,141 - PP_0031 0.17 -0.0
35,141 - PP_0031 0.17 -0.1
35,169 + PP_0031 0.22 -0.3
35,169 + PP_0031 0.22 +0.3
35,169 + PP_0031 0.22 -0.7
35,170 - PP_0031 0.22 -2.9
35,170 - PP_0031 0.22 -3.3
35,170 - PP_0031 0.22 +0.6
35,257 + PP_0031 0.37 +0.5
35,257 + PP_0031 0.37 -3.1
35,258 - PP_0031 0.37 -0.3
35,258 - +1.3
35,258 - PP_0031 0.37 -0.8
35,297 + PP_0031 0.44 -0.9
35,298 - PP_0031 0.44 -0.5
35,327 + PP_0031 0.49 -1.3
35,327 + PP_0031 0.49 +0.3
35,328 - PP_0031 0.49 -0.2
35,384 - PP_0031 0.59 -1.1
35,616 + -2.5
35,617 - +0.2
35,617 - +0.1
35,797 + +1.4
35,860 - -0.3
35,877 - -1.9
35,877 - -0.2
36,094 + +0.4
36,199 + +0.1
36,327 + -0.9
36,327 + +0.3
36,327 + +0.2
36,328 - -1.7
36,328 - -0.1
36,328 - +0.6
36,328 - +1.7
36,376 + PP_0033 0.12 -0.2
36,376 + PP_0033 0.12 -0.6
36,376 + PP_0033 0.12 -2.8
36,376 + PP_0033 0.12 +0.4
36,377 - PP_0033 0.12 +1.5
36,454 + PP_0033 0.18 -0.2
36,455 - PP_0033 0.18 -0.3
36,472 + PP_0033 0.19 +0.3
36,473 - PP_0033 0.19 -1.0
36,473 - PP_0033 0.19 -0.5
36,473 - PP_0033 0.19 -0.7
36,552 + PP_0033 0.24 -0.5
36,553 - PP_0033 0.24 -0.9
36,553 - PP_0033 0.24 -3.3
36,553 - PP_0033 0.24 -0.7
36,565 + PP_0033 0.25 +0.7

Or see this region's nucleotide sequence