Strain Fitness in Pseudomonas putida KT2440 around PP_1881

Experiment: P. putida compost MOI 0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida compost MOI 0.1
2,106,426	+		PP_1880	0.68	-0.6
2,106,427	-		PP_1880	0.69	-0.6
2,106,525	+		PP_1880	0.73	-0.4
2,106,525	+		PP_1880	0.73	-0.1
2,106,526	-		PP_1880	0.73	+0.1
2,106,564	-		PP_1880	0.75	-0.3
2,106,652	+		PP_1880	0.79	-0.1
2,107,009	+				+1.3
2,107,009	+				-0.2
2,107,009	+				-0.0
2,107,010	-				+1.7
2,107,166	+				+0.1
2,107,197	+				-0.3
2,107,197	+				+0.2
2,107,207	-				-0.2
2,107,255	+				-0.6
2,107,257	+				+0.8
2,107,383	-				-0.3
2,107,383	-				+0.6
2,107,383	-				+0.2
2,107,383	-				-0.9
2,107,385	+				-1.5
2,107,385	+				+0.3
2,107,386	-				+0.8
2,107,386	-				-0.3
2,107,386	-				-0.5
2,107,386	-				-1.1
2,107,408	+				+0.1
2,107,408	+				-0.1
2,107,409	-				-1.5
2,107,409	-				-0.7
2,107,409	-				+0.1
2,107,409	-				-0.3
2,107,447	+				+0.1
2,107,448	-				-0.2
2,107,448	-				+1.5
2,107,448	-				+1.2
2,107,471	+				+0.5
2,107,579	+		PP_1881	0.14	+0.4
2,107,579	+		PP_1881	0.14	-0.3
2,107,579	+		PP_1881	0.14	-0.1
2,107,579	+		PP_1881	0.14	+0.3
2,107,579	+		PP_1881	0.14	-0.1
2,107,580	-		PP_1881	0.14	-0.3
2,107,580	-		PP_1881	0.14	+0.6
2,107,580	-		PP_1881	0.14	-1.3
2,107,580	-		PP_1881	0.14	-0.4
2,107,580	-		PP_1881	0.14	-0.5
2,107,767	+		PP_1881	0.23	+1.4
2,107,768	-		PP_1881	0.23	-0.5
2,107,768	-		PP_1881	0.23	+0.8
2,107,773	+		PP_1881	0.23	-0.4
2,107,774	-		PP_1881	0.23	-1.7
2,107,831	+		PP_1881	0.26	-0.2
2,107,831	+		PP_1881	0.26	-0.3
2,107,832	-		PP_1881	0.26	-1.1
2,107,832	-		PP_1881	0.26	-0.4
2,107,856	+		PP_1881	0.27	-0.2
2,107,856	+		PP_1881	0.27	-0.6
2,107,872	-		PP_1881	0.28	-1.3
2,107,872	-		PP_1881	0.28	+0.3
2,107,873	+		PP_1881	0.28	-0.8
2,107,873	+		PP_1881	0.28	-0.4
2,107,873	+		PP_1881	0.28	-0.8
2,107,873	+		PP_1881	0.28	+0.5
2,107,873	+		PP_1881	0.28	-0.7
2,107,873	+		PP_1881	0.28	-0.3
2,107,873	+		PP_1881	0.28	+0.1
2,107,874	-		PP_1881	0.28	-0.7
2,107,874	-		PP_1881	0.28	-0.4
2,107,874	-		PP_1881	0.28	-0.2
2,107,960	+		PP_1881	0.32	-0.3
2,107,961	-		PP_1881	0.32	+0.3
2,107,971	+		PP_1881	0.33	-0.3
2,107,998	+		PP_1881	0.34	+0.1
2,108,054	+		PP_1881	0.37	+1.0
2,108,205	+		PP_1881	0.44	+0.6
2,108,205	+		PP_1881	0.44	+0.1
2,108,205	+		PP_1881	0.44	-1.8
2,108,206	-		PP_1881	0.44	+0.1
2,108,206	-		PP_1881	0.44	-0.3
2,108,206	-		PP_1881	0.44	-0.6
2,108,206	-		PP_1881	0.44	-0.6
2,108,216	-		PP_1881	0.45	+0.5
2,108,216	-		PP_1881	0.45	+0.5
2,108,233	-		PP_1881	0.46	+0.4
2,108,254	+		PP_1881	0.47	+0.4
2,108,254	+		PP_1881	0.47	-0.4
2,108,280	+		PP_1881	0.48	-1.4
2,108,313	+		PP_1881	0.50	+0.4
2,108,314	-		PP_1881	0.50	-0.4
2,108,314	-		PP_1881	0.50	+0.1
2,108,314	-		PP_1881	0.50	-0.5
2,108,314	-		PP_1881	0.50	-0.2
2,108,383	+				-1.8
2,108,384	-		PP_1881	0.53	+1.2
2,108,384	-		PP_1881	0.53	-0.5
2,108,391	+		PP_1881	0.54	-0.5
2,108,397	+		PP_1881	0.54	-0.6
2,108,398	-		PP_1881	0.54	-0.2
2,108,433	+		PP_1881	0.56	-0.7
2,108,547	-		PP_1881	0.61	-0.4
2,108,557	+		PP_1881	0.62	-0.1
2,108,557	+		PP_1881	0.62	-0.8
2,108,557	+		PP_1881	0.62	-0.3
2,108,557	+		PP_1881	0.62	-0.2
2,108,558	-		PP_1881	0.62	+0.4
2,108,560	+		PP_1881	0.62	+1.0
2,108,569	+		PP_1881	0.62	-1.0
2,108,570	-		PP_1881	0.62	-0.0
2,108,570	-		PP_1881	0.62	-0.6
2,108,570	-		PP_1881	0.62	-1.0
2,108,596	-		PP_1881	0.64	+0.1
2,108,596	-		PP_1881	0.64	-0.1
2,108,617	-		PP_1881	0.65	+1.5
2,108,657	+		PP_1881	0.67	+0.2
2,108,662	+		PP_1881	0.67	-1.2
2,108,663	-		PP_1881	0.67	+0.6
2,108,663	-		PP_1881	0.67	-0.3
2,108,663	-		PP_1881	0.67	-0.7
2,108,696	-		PP_1881	0.69	-0.4
2,108,708	-		PP_1881	0.69	-0.2
2,108,711	+		PP_1881	0.69	+0.4
2,108,712	-		PP_1881	0.69	+0.8
2,108,723	+		PP_1881	0.70	+0.5
2,108,724	-		PP_1881	0.70	-0.0
2,108,724	-		PP_1881	0.70	-0.8
2,108,742	+		PP_1881	0.71	+1.5
2,108,742	+		PP_1881	0.71	+0.8
2,108,742	+		PP_1881	0.71	+0.3
2,108,743	-		PP_1881	0.71	-0.5
2,108,743	-		PP_1881	0.71	-0.1
2,108,779	+		PP_1881	0.73	-0.0
2,108,779	+		PP_1881	0.73	-0.0
2,108,780	-		PP_1881	0.73	-0.3
2,108,780	-		PP_1881	0.73	-0.2
2,108,780	-		PP_1881	0.73	-1.0
2,108,881	+		PP_1881	0.78	-0.8
2,108,881	+		PP_1881	0.78	-1.1
2,108,882	-		PP_1881	0.78	-0.3
2,108,882	-		PP_1881	0.78	+0.4
2,108,882	-		PP_1881	0.78	-0.9
2,108,882	-		PP_1881	0.78	-0.0
2,109,076	+		PP_1881	0.87	-0.6
2,109,076	+		PP_1881	0.87	-0.8
2,109,253	+				+0.4
2,109,303	+				-0.5
2,109,331	+				-0.9
2,109,331	+				-0.5
2,109,332	-				-0.5
2,109,332	-				+0.1
2,109,389	-				+0.9
2,109,448	-				-0.5
2,109,579	-				+0.2
2,109,579	-				-0.1
2,109,580	+				+0.2
2,109,580	+				+0.2
2,109,581	-				-0.2
2,109,581	-				-1.2
2,109,653	+				+0.5
2,109,653	+				-0.4
2,109,653	+				-1.0
2,109,654	-				-0.3
2,109,654	-				+0.0
2,109,758	+				-0.3
2,109,759	-				+0.4
2,109,759	-				-0.3
2,109,898	-		PP_1882	0.10	+0.6
2,109,948	+		PP_1882	0.11	+0.5
2,109,948	+		PP_1882	0.11	-1.5
2,109,949	-		PP_1882	0.11	+0.7
2,109,949	-		PP_1882	0.11	+0.1
2,109,949	-		PP_1882	0.11	-0.8
2,109,960	+		PP_1882	0.12	-0.4
2,109,985	-		PP_1882	0.12	+0.4
2,109,985	-		PP_1882	0.12	+1.7
2,109,985	-		PP_1882	0.12	+0.4
2,110,009	+		PP_1882	0.13	+1.2
2,110,009	+		PP_1882	0.13	-0.2
2,110,010	-		PP_1882	0.13	+0.2
2,110,010	-		PP_1882	0.13	-2.1
2,110,010	-		PP_1882	0.13	+0.7
2,110,010	-				-1.1
2,110,013	+		PP_1882	0.13	+1.5
2,110,014	-		PP_1882	0.13	-0.7
2,110,014	-		PP_1882	0.13	+0.3
2,110,060	+		PP_1882	0.14	-0.1
2,110,060	+		PP_1882	0.14	-1.9
2,110,061	-		PP_1882	0.14	+0.2
2,110,111	+		PP_1882	0.15	-0.9
2,110,111	+		PP_1882	0.15	+0.9
2,110,112	-		PP_1882	0.15	-0.3
2,110,112	-		PP_1882	0.15	-0.2
2,110,114	+				+0.3
2,110,114	+		PP_1882	0.15	-0.2
2,110,115	-		PP_1882	0.15	-0.9
2,110,210	+		PP_1882	0.17	-0.4
2,110,211	-		PP_1882	0.17	+0.3
2,110,291	+		PP_1882	0.18	-0.0
2,110,298	+		PP_1882	0.19	+1.0
2,110,298	+		PP_1882	0.19	-0.2
2,110,299	-		PP_1882	0.19	+1.0
2,110,300	+		PP_1882	0.19	-0.3