Experiment: P. putida Sci small MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4426 and PP_4427 overlap by 1 nucleotides PP_4427 and PP_4428 are separated by 70 nucleotides PP_4428 and PP_4429 are separated by 243 nucleotides
PP_4426: PP_4426 - Amino acid ABC transporter, permease protein, at 5,021,698 to 5,022,354
_4426
PP_4427: PP_4427 - Amino acid ABC transporter, permease protein, at 5,022,354 to 5,023,010
_4427
PP_4428: PP_4428 - Amino acid ABC transporter, periplasmic amino acid-binding protein, at 5,023,081 to 5,023,935
_4428
PP_4429: PP_4429 - Transcriptional regulator, GntR family, at 5,024,179 to 5,025,579
_4429
Position (kb) 5023
5024 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5022.292 kb on - strand at 5022.326 kb on - strand at 5022.333 kb on - strand at 5022.333 kb on - strand at 5022.433 kb on - strand, within PP_4427 at 5022.439 kb on + strand, within PP_4427 at 5022.454 kb on - strand, within PP_4427 at 5022.530 kb on + strand, within PP_4427 at 5022.531 kb on - strand, within PP_4427 at 5022.681 kb on - strand, within PP_4427 at 5022.709 kb on - strand, within PP_4427 at 5022.709 kb on - strand, within PP_4427 at 5022.709 kb on - strand, within PP_4427 at 5022.722 kb on - strand, within PP_4427 at 5022.732 kb on - strand, within PP_4427 at 5022.764 kb on - strand, within PP_4427 at 5022.860 kb on - strand, within PP_4427 at 5022.860 kb on - strand, within PP_4427 at 5022.989 kb on + strand at 5022.989 kb on + strand at 5022.989 kb on + strand at 5022.989 kb on + strand at 5022.990 kb on - strand at 5022.990 kb on - strand at 5022.990 kb on - strand at 5022.990 kb on - strand at 5022.999 kb on + strand at 5023.000 kb on - strand at 5023.018 kb on + strand at 5023.028 kb on + strand at 5023.029 kb on - strand at 5023.082 kb on + strand at 5023.113 kb on + strand at 5023.292 kb on - strand, within PP_4428 at 5023.342 kb on + strand, within PP_4428 at 5023.343 kb on - strand, within PP_4428 at 5023.392 kb on + strand, within PP_4428 at 5023.442 kb on + strand, within PP_4428 at 5023.565 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.613 kb on + strand, within PP_4428 at 5023.614 kb on - strand, within PP_4428 at 5023.614 kb on - strand, within PP_4428 at 5023.614 kb on - strand, within PP_4428 at 5023.614 kb on - strand, within PP_4428 at 5023.614 kb on - strand, within PP_4428 at 5023.614 kb on - strand, within PP_4428 at 5023.684 kb on + strand, within PP_4428 at 5023.684 kb on + strand, within PP_4428 at 5023.685 kb on - strand, within PP_4428 at 5023.685 kb on - strand, within PP_4428 at 5023.685 kb on - strand, within PP_4428 at 5023.775 kb on + strand, within PP_4428 at 5023.775 kb on + strand, within PP_4428 at 5023.845 kb on + strand, within PP_4428 at 5023.845 kb on + strand, within PP_4428 at 5023.845 kb on + strand, within PP_4428 at 5023.845 kb on + strand, within PP_4428 at 5023.845 kb on + strand, within PP_4428 at 5023.845 kb on + strand, within PP_4428 at 5023.846 kb on - strand, within PP_4428 at 5023.846 kb on - strand, within PP_4428 at 5023.846 kb on - strand, within PP_4428 at 5023.950 kb on + strand at 5023.950 kb on + strand at 5023.956 kb on - strand at 5023.956 kb on - strand at 5023.989 kb on + strand at 5023.989 kb on + strand at 5023.990 kb on - strand at 5023.990 kb on - strand at 5024.034 kb on + strand at 5024.034 kb on + strand at 5024.080 kb on + strand at 5024.080 kb on + strand at 5024.081 kb on - strand at 5024.081 kb on - strand at 5024.111 kb on + strand at 5024.112 kb on - strand at 5024.136 kb on + strand at 5024.136 kb on + strand at 5024.136 kb on + strand at 5024.137 kb on - strand at 5024.137 kb on - strand at 5024.150 kb on + strand at 5024.150 kb on + strand at 5024.150 kb on + strand at 5024.151 kb on - strand at 5024.162 kb on + strand at 5024.163 kb on - strand at 5024.174 kb on + strand at 5024.174 kb on + strand at 5024.174 kb on + strand at 5024.174 kb on + strand at 5024.174 kb on + strand at 5024.175 kb on - strand at 5024.233 kb on + strand at 5024.234 kb on - strand at 5024.277 kb on + strand at 5024.277 kb on + strand at 5024.277 kb on + strand at 5024.277 kb on + strand at 5024.277 kb on + strand at 5024.277 kb on + strand at 5024.277 kb on + strand at 5024.278 kb on - strand at 5024.278 kb on - strand at 5024.362 kb on + strand, within PP_4429 at 5024.363 kb on - strand, within PP_4429 at 5024.387 kb on + strand, within PP_4429 at 5024.387 kb on + strand, within PP_4429 at 5024.388 kb on - strand, within PP_4429 at 5024.388 kb on - strand, within PP_4429 at 5024.388 kb on - strand, within PP_4429 at 5024.390 kb on + strand, within PP_4429 at 5024.390 kb on + strand, within PP_4429 at 5024.391 kb on - strand, within PP_4429 at 5024.391 kb on - strand at 5024.391 kb on - strand, within PP_4429 at 5024.444 kb on + strand, within PP_4429 at 5024.444 kb on + strand, within PP_4429 at 5024.444 kb on + strand, within PP_4429 at 5024.444 kb on + strand, within PP_4429 at 5024.445 kb on - strand, within PP_4429 at 5024.445 kb on - strand, within PP_4429 at 5024.452 kb on + strand, within PP_4429 at 5024.452 kb on + strand, within PP_4429 at 5024.452 kb on + strand, within PP_4429 at 5024.452 kb on + strand, within PP_4429 at 5024.452 kb on + strand, within PP_4429 at 5024.453 kb on - strand, within PP_4429 at 5024.453 kb on - strand, within PP_4429 at 5024.453 kb on - strand, within PP_4429 at 5024.490 kb on - strand, within PP_4429 at 5024.490 kb on - strand, within PP_4429 at 5024.530 kb on + strand, within PP_4429 at 5024.530 kb on + strand, within PP_4429 at 5024.531 kb on - strand, within PP_4429 at 5024.531 kb on - strand, within PP_4429 at 5024.531 kb on - strand, within PP_4429 at 5024.559 kb on + strand, within PP_4429 at 5024.559 kb on + strand, within PP_4429 at 5024.560 kb on - strand, within PP_4429 at 5024.560 kb on - strand, within PP_4429 at 5024.601 kb on - strand at 5024.712 kb on - strand, within PP_4429 at 5024.825 kb on + strand, within PP_4429 at 5024.900 kb on + strand, within PP_4429 at 5024.900 kb on + strand, within PP_4429 at 5024.901 kb on - strand, within PP_4429 at 5024.916 kb on + strand, within PP_4429 at 5024.916 kb on + strand, within PP_4429 at 5024.916 kb on + strand, within PP_4429 at 5024.917 kb on - strand, within PP_4429
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1 remove 5,022,292 - -0.6 5,022,326 - -4.7 5,022,333 - -4.5 5,022,333 - -4.3 5,022,433 - PP_4427 0.12 -4.2 5,022,439 + PP_4427 0.13 +1.7 5,022,454 - PP_4427 0.15 +0.5 5,022,530 + PP_4427 0.27 +0.6 5,022,531 - PP_4427 0.27 -0.0 5,022,681 - PP_4427 0.50 +0.5 5,022,709 - PP_4427 0.54 -0.3 5,022,709 - PP_4427 0.54 +1.1 5,022,709 - PP_4427 0.54 +1.0 5,022,722 - PP_4427 0.56 -0.5 5,022,732 - PP_4427 0.58 -2.9 5,022,764 - PP_4427 0.62 +1.2 5,022,860 - PP_4427 0.77 -0.1 5,022,860 - PP_4427 0.77 -4.7 5,022,989 + +1.9 5,022,989 + -4.9 5,022,989 + -0.1 5,022,989 + -1.6 5,022,990 - +1.6 5,022,990 - +0.3 5,022,990 - -4.2 5,022,990 - -1.6 5,022,999 + -1.0 5,023,000 - +0.8 5,023,018 + -4.0 5,023,028 + +0.6 5,023,029 - +0.3 5,023,082 + +2.1 5,023,113 + +1.6 5,023,292 - PP_4428 0.25 -3.8 5,023,342 + PP_4428 0.31 +1.7 5,023,343 - PP_4428 0.31 +0.7 5,023,392 + PP_4428 0.36 -4.6 5,023,442 + PP_4428 0.42 +1.2 5,023,565 + PP_4428 0.57 +1.6 5,023,613 + PP_4428 0.62 +0.9 5,023,613 + PP_4428 0.62 -0.2 5,023,613 + PP_4428 0.62 +1.2 5,023,613 + PP_4428 0.62 +0.8 5,023,613 + PP_4428 0.62 +1.6 5,023,613 + PP_4428 0.62 +1.7 5,023,613 + PP_4428 0.62 -5.0 5,023,613 + PP_4428 0.62 +2.9 5,023,613 + PP_4428 0.62 +2.4 5,023,613 + PP_4428 0.62 -4.6 5,023,614 - PP_4428 0.62 +1.7 5,023,614 - PP_4428 0.62 -4.5 5,023,614 - PP_4428 0.62 -4.2 5,023,614 - PP_4428 0.62 +1.9 5,023,614 - PP_4428 0.62 +0.7 5,023,614 - PP_4428 0.62 -0.3 5,023,684 + PP_4428 0.71 -4.7 5,023,684 + PP_4428 0.71 +0.6 5,023,685 - PP_4428 0.71 +2.2 5,023,685 - PP_4428 0.71 -2.2 5,023,685 - PP_4428 0.71 +1.0 5,023,775 + PP_4428 0.81 +1.9 5,023,775 + PP_4428 0.81 +1.5 5,023,845 + PP_4428 0.89 +0.9 5,023,845 + PP_4428 0.89 +2.1 5,023,845 + PP_4428 0.89 +1.0 5,023,845 + PP_4428 0.89 +2.3 5,023,845 + PP_4428 0.89 +0.9 5,023,845 + PP_4428 0.89 +1.8 5,023,846 - PP_4428 0.89 -2.6 5,023,846 - PP_4428 0.89 +0.9 5,023,846 - PP_4428 0.89 +1.9 5,023,950 + +0.9 5,023,950 + +1.2 5,023,956 - -3.4 5,023,956 - +0.1 5,023,989 + -5.0 5,023,989 + +0.7 5,023,990 - -3.9 5,023,990 - +1.4 5,024,034 + -4.8 5,024,034 + -3.9 5,024,080 + +0.3 5,024,080 + -4.2 5,024,081 - +1.6 5,024,081 - +0.8 5,024,111 + +1.0 5,024,112 - +1.0 5,024,136 + -4.5 5,024,136 + +2.4 5,024,136 + +0.1 5,024,137 - +0.0 5,024,137 - +1.1 5,024,150 + +0.4 5,024,150 + +0.1 5,024,150 + -4.5 5,024,151 - +2.1 5,024,162 + -5.0 5,024,163 - +0.9 5,024,174 + +1.1 5,024,174 + +2.0 5,024,174 + +3.1 5,024,174 + +0.4 5,024,174 + -0.3 5,024,175 - +1.6 5,024,233 + -2.8 5,024,234 - +0.5 5,024,277 + +0.5 5,024,277 + +1.0 5,024,277 + +1.7 5,024,277 + +0.8 5,024,277 + +1.3 5,024,277 + +0.9 5,024,277 + +2.2 5,024,278 - +1.5 5,024,278 - +1.4 5,024,362 + PP_4429 0.13 +1.9 5,024,363 - PP_4429 0.13 +1.8 5,024,387 + PP_4429 0.15 +1.0 5,024,387 + PP_4429 0.15 +0.5 5,024,388 - PP_4429 0.15 +1.3 5,024,388 - PP_4429 0.15 +1.6 5,024,388 - PP_4429 0.15 +2.2 5,024,390 + PP_4429 0.15 +1.5 5,024,390 + PP_4429 0.15 +0.3 5,024,391 - PP_4429 0.15 +0.8 5,024,391 - -1.6 5,024,391 - PP_4429 0.15 -2.2 5,024,444 + PP_4429 0.19 +1.6 5,024,444 + PP_4429 0.19 +2.0 5,024,444 + PP_4429 0.19 +2.0 5,024,444 + PP_4429 0.19 -4.8 5,024,445 - PP_4429 0.19 +0.4 5,024,445 - PP_4429 0.19 -4.2 5,024,452 + PP_4429 0.19 -0.3 5,024,452 + PP_4429 0.19 +1.4 5,024,452 + PP_4429 0.19 -0.8 5,024,452 + PP_4429 0.19 -2.6 5,024,452 + PP_4429 0.19 -4.5 5,024,453 - PP_4429 0.20 +0.9 5,024,453 - PP_4429 0.20 -0.7 5,024,453 - PP_4429 0.20 +0.6 5,024,490 - PP_4429 0.22 +1.2 5,024,490 - PP_4429 0.22 -0.1 5,024,530 + PP_4429 0.25 -0.1 5,024,530 + PP_4429 0.25 +0.7 5,024,531 - PP_4429 0.25 -0.3 5,024,531 - PP_4429 0.25 -1.4 5,024,531 - PP_4429 0.25 -5.2 5,024,559 + PP_4429 0.27 -0.2 5,024,559 + PP_4429 0.27 -5.4 5,024,560 - PP_4429 0.27 +1.8 5,024,560 - PP_4429 0.27 +2.1 5,024,601 - +0.7 5,024,712 - PP_4429 0.38 +2.2 5,024,825 + PP_4429 0.46 -4.2 5,024,900 + PP_4429 0.51 +0.1 5,024,900 + PP_4429 0.51 +1.2 5,024,901 - PP_4429 0.52 +1.2 5,024,916 + PP_4429 0.53 -4.5 5,024,916 + PP_4429 0.53 +0.9 5,024,916 + PP_4429 0.53 -0.3 5,024,917 - PP_4429 0.53 -3.9
Or see this region's nucleotide sequence