Strain Fitness in Pseudomonas putida KT2440 around PP_3729

Experiment: P. putida Sci small MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3728 and PP_3729 overlap by 4 nucleotidesPP_3729 and PP_3730 overlap by 4 nucleotidesPP_3730 and PP_3731 are separated by 73 nucleotides PP_3728: PP_3728 - Sensor histidine kinase/response regulator, at 4,253,875 to 4,256,127 _3728 PP_3729: PP_3729 - Periplasmic amino acid-binding protein-related protein, at 4,256,124 to 4,256,906 _3729 PP_3730: PP_3730 - Transcriptional regulatory protein AruR, at 4,256,903 to 4,257,619 _3730 PP_3731: PP_3731 - Transcriptional regulator, TetR family, at 4,257,693 to 4,258,337 _3731 Position (kb) 4256 4257Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4255.154 kb on + strand, within PP_3728at 4255.155 kb on - strand, within PP_3728at 4255.155 kb on - strand, within PP_3728at 4255.199 kb on + strand, within PP_3728at 4255.200 kb on - strandat 4255.272 kb on + strand, within PP_3728at 4255.272 kb on + strand, within PP_3728at 4255.421 kb on - strand, within PP_3728at 4255.476 kb on + strand, within PP_3728at 4255.623 kb on - strand, within PP_3728at 4255.623 kb on - strand, within PP_3728at 4255.623 kb on - strand, within PP_3728at 4255.700 kb on + strand, within PP_3728at 4255.700 kb on + strand, within PP_3728at 4255.700 kb on + strand, within PP_3728at 4255.700 kb on + strand, within PP_3728at 4255.782 kb on - strand, within PP_3728at 4255.782 kb on - strand, within PP_3728at 4255.782 kb on - strand, within PP_3728at 4255.782 kb on - strand, within PP_3728at 4256.028 kb on - strandat 4256.161 kb on + strandat 4256.383 kb on + strand, within PP_3729at 4256.383 kb on + strand, within PP_3729at 4256.384 kb on - strand, within PP_3729at 4256.384 kb on - strand, within PP_3729at 4256.485 kb on + strand, within PP_3729at 4256.486 kb on - strand, within PP_3729at 4256.486 kb on - strand, within PP_3729at 4256.497 kb on + strand, within PP_3729at 4256.567 kb on - strand, within PP_3729at 4256.615 kb on + strand, within PP_3729at 4256.642 kb on - strand, within PP_3729at 4256.932 kb on - strandat 4256.932 kb on - strandat 4257.325 kb on - strandat 4257.366 kb on + strand, within PP_3730at 4257.533 kb on + strandat 4257.534 kb on - strand, within PP_3730at 4257.558 kb on + strandat 4257.559 kb on - strandat 4257.559 kb on - strandat 4257.651 kb on + strandat 4257.652 kb on - strandat 4257.652 kb on - strandat 4257.652 kb on - strandat 4257.652 kb on - strandat 4257.672 kb on + strandat 4257.673 kb on - strandat 4257.673 kb on - strandat 4257.906 kb on + strand, within PP_3731

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1
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4,255,154 + PP_3728 0.57 -3.1
4,255,155 - PP_3728 0.57 +1.5
4,255,155 - PP_3728 0.57 -3.9
4,255,199 + PP_3728 0.59 -5.0
4,255,200 - -1.3
4,255,272 + PP_3728 0.62 +2.0
4,255,272 + PP_3728 0.62 +1.0
4,255,421 - PP_3728 0.69 +0.1
4,255,476 + PP_3728 0.71 -3.5
4,255,623 - PP_3728 0.78 +1.5
4,255,623 - PP_3728 0.78 -4.7
4,255,623 - PP_3728 0.78 -0.2
4,255,700 + PP_3728 0.81 +1.3
4,255,700 + PP_3728 0.81 +1.6
4,255,700 + PP_3728 0.81 +0.8
4,255,700 + PP_3728 0.81 +0.5
4,255,782 - PP_3728 0.85 +0.2
4,255,782 - PP_3728 0.85 -3.5
4,255,782 - PP_3728 0.85 +0.6
4,255,782 - PP_3728 0.85 -3.3
4,256,028 - -2.9
4,256,161 + +2.0
4,256,383 + PP_3729 0.33 -2.3
4,256,383 + PP_3729 0.33 -4.3
4,256,384 - PP_3729 0.33 -4.3
4,256,384 - PP_3729 0.33 +0.1
4,256,485 + PP_3729 0.46 -5.4
4,256,486 - PP_3729 0.46 -2.9
4,256,486 - PP_3729 0.46 -3.7
4,256,497 + PP_3729 0.48 -3.3
4,256,567 - PP_3729 0.57 +1.4
4,256,615 + PP_3729 0.63 +0.5
4,256,642 - PP_3729 0.66 -4.3
4,256,932 - -0.2
4,256,932 - -5.7
4,257,325 - -2.7
4,257,366 + PP_3730 0.65 +0.5
4,257,533 + -1.3
4,257,534 - PP_3730 0.88 -4.9
4,257,558 + -4.9
4,257,559 - -0.0
4,257,559 - -5.4
4,257,651 + -5.0
4,257,652 - +0.5
4,257,652 - -3.9
4,257,652 - +0.5
4,257,652 - -4.4
4,257,672 + -4.2
4,257,673 - -2.4
4,257,673 - -0.1
4,257,906 + PP_3731 0.33 +2.0

Or see this region's nucleotide sequence