Experiment: P. putida Sci small MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0626 and PP_0627 are separated by 84 nucleotides PP_0627 and PP_0628 are separated by 132 nucleotides PP_0628 and PP_5447 are separated by 55 nucleotides
PP_0626: PP_0626 - NADH dehydrogenase, at 734,021 to 735,316
_0626
PP_0627: PP_0627 - conserved protein of unknown function, at 735,401 to 735,574
_0627
PP_0628: PP_0628 - conserved protein of unknown function, at 735,707 to 736,336
_0628
PP_5447: PP_5447 - conserved membrane protein of unknown function, at 736,392 to 736,823
_5447
Position (kb) 735
736 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 734.731 kb on - strand, within PP_0626 at 734.731 kb on - strand, within PP_0626 at 734.777 kb on + strand, within PP_0626 at 734.778 kb on - strand, within PP_0626 at 734.807 kb on + strand, within PP_0626 at 734.853 kb on + strand, within PP_0626 at 735.123 kb on + strand, within PP_0626 at 735.123 kb on + strand, within PP_0626 at 735.124 kb on - strand, within PP_0626 at 735.124 kb on - strand, within PP_0626 at 735.251 kb on - strand at 735.322 kb on + strand at 735.329 kb on + strand at 735.329 kb on + strand at 735.330 kb on - strand at 735.330 kb on - strand at 735.330 kb on - strand at 735.405 kb on - strand at 735.405 kb on - strand at 735.405 kb on - strand at 735.528 kb on + strand, within PP_0627 at 735.528 kb on + strand, within PP_0627 at 735.529 kb on - strand, within PP_0627 at 735.529 kb on - strand, within PP_0627 at 735.591 kb on + strand at 735.659 kb on + strand at 735.677 kb on + strand at 735.678 kb on - strand at 735.722 kb on + strand at 735.722 kb on + strand at 735.723 kb on - strand at 735.846 kb on + strand, within PP_0628 at 735.847 kb on - strand, within PP_0628 at 736.204 kb on - strand, within PP_0628 at 736.261 kb on + strand, within PP_0628 at 736.262 kb on - strand, within PP_0628 at 736.306 kb on + strand at 736.307 kb on - strand at 736.307 kb on - strand at 736.320 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.369 kb on - strand at 736.475 kb on + strand, within PP_5447 at 736.475 kb on + strand, within PP_5447 at 736.509 kb on + strand, within PP_5447 at 736.537 kb on + strand, within PP_5447 at 736.537 kb on + strand, within PP_5447 at 736.537 kb on + strand, within PP_5447 at 736.538 kb on - strand, within PP_5447 at 736.538 kb on - strand, within PP_5447
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1 remove 734,731 - PP_0626 0.55 +0.9 734,731 - PP_0626 0.55 +1.1 734,777 + PP_0626 0.58 -4.4 734,778 - PP_0626 0.58 -3.4 734,807 + PP_0626 0.61 +0.2 734,853 + PP_0626 0.64 -0.1 735,123 + PP_0626 0.85 -0.1 735,123 + PP_0626 0.85 -3.7 735,124 - PP_0626 0.85 -2.7 735,124 - PP_0626 0.85 -4.0 735,251 - -4.9 735,322 + +1.8 735,329 + -0.6 735,329 + +2.4 735,330 - -4.6 735,330 - +0.8 735,330 - -1.4 735,405 - -4.6 735,405 - -4.4 735,405 - -4.6 735,528 + PP_0627 0.73 -4.5 735,528 + PP_0627 0.73 -4.6 735,529 - PP_0627 0.74 -3.4 735,529 - PP_0627 0.74 +0.6 735,591 + +0.1 735,659 + -4.9 735,677 + +0.5 735,678 - -4.1 735,722 + -3.4 735,722 + +0.4 735,723 - -4.9 735,846 + PP_0628 0.22 +1.3 735,847 - PP_0628 0.22 -1.8 736,204 - PP_0628 0.79 -4.9 736,261 + PP_0628 0.88 -5.5 736,262 - PP_0628 0.88 -2.7 736,306 + -1.4 736,307 - +0.2 736,307 - -4.5 736,320 + -1.2 736,368 + -0.1 736,368 + +1.4 736,368 + -0.0 736,368 + -0.2 736,368 + -3.7 736,368 + -1.4 736,368 + -3.9 736,368 + +0.9 736,369 - +1.4 736,475 + PP_5447 0.19 -1.1 736,475 + PP_5447 0.19 +1.1 736,509 + PP_5447 0.27 -4.1 736,537 + PP_5447 0.34 +1.7 736,537 + PP_5447 0.34 +0.3 736,537 + PP_5447 0.34 -5.5 736,538 - PP_5447 0.34 -2.4 736,538 - PP_5447 0.34 -3.7
Or see this region's nucleotide sequence