Experiment: P. putida Sci small MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0548 and PP_0549 overlap by 4 nucleotides PP_0549 and PP_0550 are separated by 107 nucleotides PP_0550 and PP_0551 are separated by 27 nucleotides
PP_0548: PP_0548 - putative phenylacrylic acid decarboxylase, padA1, at 637,123 to 637,752
_0548
PP_0549: PP_0549 - putative Lipoprotein, at 637,749 to 638,036
_0549
PP_0550: PP_0550 - conserved protein of unknown function, at 638,144 to 638,788
_0550
PP_0551: PP_0551 - MORN domain protein, at 638,816 to 640,744
_0551
Position (kb) 638
639 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 637.849 kb on - strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.873 kb on - strand, within PP_0549 at 637.873 kb on - strand, within PP_0549 at 637.908 kb on + strand, within PP_0549 at 638.008 kb on + strand at 638.009 kb on - strand at 638.009 kb on - strand at 638.064 kb on + strand at 638.065 kb on - strand at 638.065 kb on - strand at 638.074 kb on + strand at 638.145 kb on + strand at 638.239 kb on + strand, within PP_0550 at 638.295 kb on - strand, within PP_0550 at 638.295 kb on - strand, within PP_0550 at 638.432 kb on - strand, within PP_0550 at 638.619 kb on - strand, within PP_0550 at 638.677 kb on + strand, within PP_0550 at 638.723 kb on + strand, within PP_0550 at 638.724 kb on - strand at 638.784 kb on + strand at 638.784 kb on + strand at 638.784 kb on + strand at 638.784 kb on + strand at 638.785 kb on - strand at 638.785 kb on - strand at 638.785 kb on - strand at 638.806 kb on - strand at 639.069 kb on + strand, within PP_0551 at 639.163 kb on + strand, within PP_0551 at 639.163 kb on + strand, within PP_0551 at 639.164 kb on - strand, within PP_0551 at 639.165 kb on + strand, within PP_0551 at 639.165 kb on + strand, within PP_0551 at 639.166 kb on - strand, within PP_0551 at 639.166 kb on - strand, within PP_0551 at 639.166 kb on - strand, within PP_0551 at 639.166 kb on - strand, within PP_0551 at 639.177 kb on + strand, within PP_0551 at 639.177 kb on + strand, within PP_0551 at 639.178 kb on - strand, within PP_0551 at 639.322 kb on - strand, within PP_0551 at 639.486 kb on + strand, within PP_0551 at 639.486 kb on + strand, within PP_0551 at 639.487 kb on - strand, within PP_0551 at 639.487 kb on - strand, within PP_0551 at 639.487 kb on - strand, within PP_0551 at 639.507 kb on - strand, within PP_0551 at 639.507 kb on - strand, within PP_0551 at 639.543 kb on + strand, within PP_0551 at 639.543 kb on + strand, within PP_0551 at 639.543 kb on + strand, within PP_0551 at 639.543 kb on + strand, within PP_0551 at 639.543 kb on + strand, within PP_0551 at 639.544 kb on - strand, within PP_0551 at 639.544 kb on - strand, within PP_0551 at 639.544 kb on - strand, within PP_0551 at 639.544 kb on - strand, within PP_0551 at 639.573 kb on - strand, within PP_0551 at 639.573 kb on - strand, within PP_0551 at 639.620 kb on + strand, within PP_0551 at 639.620 kb on + strand, within PP_0551 at 639.621 kb on - strand, within PP_0551 at 639.621 kb on - strand, within PP_0551 at 639.735 kb on + strand, within PP_0551 at 639.762 kb on + strand, within PP_0551 at 639.763 kb on - strand, within PP_0551 at 639.763 kb on - strand, within PP_0551 at 639.763 kb on - strand, within PP_0551
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1 remove 637,849 - PP_0549 0.35 +2.8 637,872 + PP_0549 0.43 -1.5 637,872 + PP_0549 0.43 +0.0 637,872 + PP_0549 0.43 +0.8 637,872 + PP_0549 0.43 +2.9 637,872 + PP_0549 0.43 +1.2 637,873 - PP_0549 0.43 -5.3 637,873 - PP_0549 0.43 +1.1 637,908 + PP_0549 0.55 +0.8 638,008 + -4.6 638,009 - +1.6 638,009 - -3.4 638,064 + -0.0 638,065 - +1.8 638,065 - -3.7 638,074 + +0.6 638,145 + -0.3 638,239 + PP_0550 0.15 -4.9 638,295 - PP_0550 0.23 +3.0 638,295 - PP_0550 0.23 +1.3 638,432 - PP_0550 0.45 +2.0 638,619 - PP_0550 0.74 +0.7 638,677 + PP_0550 0.83 -2.4 638,723 + PP_0550 0.90 -4.1 638,724 - +1.9 638,784 + +0.4 638,784 + -4.7 638,784 + +1.6 638,784 + +0.4 638,785 - +1.4 638,785 - -4.8 638,785 - +0.7 638,806 - +0.9 639,069 + PP_0551 0.13 -0.4 639,163 + PP_0551 0.18 -3.9 639,163 + PP_0551 0.18 +0.5 639,164 - PP_0551 0.18 +1.6 639,165 + PP_0551 0.18 -0.1 639,165 + PP_0551 0.18 -4.6 639,166 - PP_0551 0.18 +1.7 639,166 - PP_0551 0.18 +1.7 639,166 - PP_0551 0.18 +0.9 639,166 - PP_0551 0.18 -0.2 639,177 + PP_0551 0.19 -0.8 639,177 + PP_0551 0.19 -3.7 639,178 - PP_0551 0.19 +1.1 639,322 - PP_0551 0.26 -0.0 639,486 + PP_0551 0.35 -2.8 639,486 + PP_0551 0.35 +0.8 639,487 - PP_0551 0.35 -4.5 639,487 - PP_0551 0.35 +1.1 639,487 - PP_0551 0.35 -2.0 639,507 - PP_0551 0.36 +1.6 639,507 - PP_0551 0.36 -1.4 639,543 + PP_0551 0.38 -0.4 639,543 + PP_0551 0.38 -4.4 639,543 + PP_0551 0.38 +2.0 639,543 + PP_0551 0.38 +0.7 639,543 + PP_0551 0.38 +2.0 639,544 - PP_0551 0.38 +0.9 639,544 - PP_0551 0.38 +0.7 639,544 - PP_0551 0.38 +0.8 639,544 - PP_0551 0.38 -5.5 639,573 - PP_0551 0.39 +1.1 639,573 - PP_0551 0.39 +3.1 639,620 + PP_0551 0.42 -5.1 639,620 + PP_0551 0.42 -4.5 639,621 - PP_0551 0.42 +0.4 639,621 - PP_0551 0.42 +1.1 639,735 + PP_0551 0.48 +3.3 639,762 + PP_0551 0.49 +1.5 639,763 - PP_0551 0.49 -2.4 639,763 - PP_0551 0.49 +1.4 639,763 - PP_0551 0.49 -4.7
Or see this region's nucleotide sequence