Experiment: P. putida Sci small MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0254 and PP_0255 are separated by 56 nucleotides PP_0255 and PP_0256 are separated by 196 nucleotides
PP_0254: PP_0254 - conserved protein of unknown function, at 308,854 to 309,294
_0254
PP_0255: PP_0255 - conserved exported protein of unknown function, at 309,351 to 309,833
_0255
PP_0256: PP_0256 - putative oxidoreductase, at 310,030 to 312,375
_0256
Position (kb) 308
309
310 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 307.935 kb on + strand at 307.936 kb on - strand at 308.006 kb on - strand at 308.053 kb on - strand at 308.139 kb on - strand at 308.236 kb on - strand at 308.341 kb on - strand at 308.363 kb on + strand at 308.364 kb on - strand at 308.388 kb on + strand at 308.389 kb on - strand at 308.607 kb on + strand at 308.703 kb on + strand at 308.704 kb on - strand at 308.787 kb on + strand at 308.788 kb on - strand at 308.788 kb on - strand at 309.134 kb on + strand, within PP_0254 at 309.134 kb on + strand, within PP_0254 at 309.135 kb on - strand, within PP_0254 at 309.139 kb on + strand, within PP_0254 at 309.292 kb on + strand at 309.353 kb on - strand at 309.388 kb on + strand at 309.388 kb on + strand at 309.389 kb on - strand at 309.389 kb on - strand at 309.487 kb on + strand, within PP_0255 at 309.487 kb on + strand, within PP_0255 at 309.487 kb on + strand, within PP_0255 at 309.487 kb on + strand, within PP_0255 at 309.488 kb on - strand, within PP_0255 at 309.488 kb on - strand, within PP_0255 at 309.488 kb on - strand, within PP_0255 at 309.488 kb on - strand, within PP_0255 at 309.492 kb on - strand, within PP_0255 at 309.535 kb on + strand, within PP_0255 at 309.535 kb on + strand, within PP_0255 at 309.535 kb on + strand, within PP_0255 at 309.535 kb on + strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.536 kb on - strand, within PP_0255 at 309.539 kb on + strand, within PP_0255 at 309.539 kb on + strand, within PP_0255 at 309.575 kb on + strand, within PP_0255 at 309.823 kb on + strand at 309.823 kb on + strand at 309.824 kb on - strand at 309.824 kb on - strand at 309.824 kb on - strand at 309.847 kb on + strand at 309.847 kb on + strand at 309.848 kb on - strand at 309.848 kb on - strand at 309.874 kb on - strand at 309.919 kb on + strand at 309.942 kb on - strand at 309.946 kb on - strand at 309.985 kb on + strand at 310.102 kb on - strand at 310.148 kb on + strand at 310.151 kb on + strand at 310.151 kb on + strand at 310.152 kb on - strand at 310.174 kb on + strand at 310.174 kb on + strand at 310.194 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1 remove 307,935 + -0.4 307,936 - -2.7 308,006 - +0.5 308,053 - +1.0 308,139 - -0.7 308,236 - +0.2 308,341 - +1.9 308,363 + -0.2 308,364 - +0.8 308,388 + -3.6 308,389 - +2.0 308,607 + -0.3 308,703 + +0.9 308,704 - +1.5 308,787 + -2.2 308,788 - -0.3 308,788 - -4.2 309,134 + PP_0254 0.63 +1.0 309,134 + PP_0254 0.63 +0.1 309,135 - PP_0254 0.64 -0.9 309,139 + PP_0254 0.65 -4.2 309,292 + -0.6 309,353 - -3.4 309,388 + -2.9 309,388 + -4.8 309,389 - -3.2 309,389 - -0.3 309,487 + PP_0255 0.28 -5.3 309,487 + PP_0255 0.28 -0.0 309,487 + PP_0255 0.28 -3.4 309,487 + PP_0255 0.28 -0.1 309,488 - PP_0255 0.28 +1.3 309,488 - PP_0255 0.28 -0.2 309,488 - PP_0255 0.28 -3.7 309,488 - PP_0255 0.28 +2.8 309,492 - PP_0255 0.29 +1.4 309,535 + PP_0255 0.38 -3.4 309,535 + PP_0255 0.38 +1.6 309,535 + PP_0255 0.38 +0.9 309,535 + PP_0255 0.38 -0.9 309,536 - PP_0255 0.38 +0.2 309,536 - PP_0255 0.38 +0.6 309,536 - PP_0255 0.38 -4.8 309,536 - PP_0255 0.38 +2.0 309,536 - PP_0255 0.38 +0.9 309,536 - PP_0255 0.38 -5.2 309,536 - PP_0255 0.38 +1.1 309,536 - PP_0255 0.38 +1.0 309,536 - PP_0255 0.38 +0.0 309,539 + PP_0255 0.39 +1.0 309,539 + PP_0255 0.39 +0.3 309,575 + PP_0255 0.46 -3.7 309,823 + -0.6 309,823 + +2.5 309,824 - -5.8 309,824 - -1.2 309,824 - -5.4 309,847 + -4.6 309,847 + -3.4 309,848 - -0.1 309,848 - +1.7 309,874 - -2.2 309,919 + +0.5 309,942 - -0.1 309,946 - -2.0 309,985 + +1.3 310,102 - +0.7 310,148 + +1.0 310,151 + +1.3 310,151 + -5.2 310,152 - +0.3 310,174 + +1.0 310,174 + -0.6 310,194 + +0.1
Or see this region's nucleotide sequence