Experiment: P. putida Sci small MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4770 and PP_4771 are separated by 167 nucleotides PP_4771 and PP_5713 are separated by 85 nucleotides PP_5713 and PP_4772 are separated by 69 nucleotides
PP_4770: PP_4770 - conserved protein of unknown function, at 5,430,479 to 5,431,237
_4770
PP_4771: PP_4771 - conserved membrane protein of unknown function, at 5,431,405 to 5,432,061
_4771
PP_5713: PP_5713 - conserved protein of unknown function, at 5,432,147 to 5,432,665
_5713
PP_4772: PP_4772 - ATP-dependent helicase HrpB, at 5,432,735 to 5,435,263
_4772
Position (kb) 5432
5433 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 5431.289 kb on + strand at 5431.289 kb on + strand at 5431.369 kb on + strand at 5431.369 kb on + strand at 5431.370 kb on - strand at 5431.438 kb on + strand at 5431.438 kb on + strand at 5431.439 kb on - strand at 5431.439 kb on - strand at 5431.591 kb on + strand, within PP_4771 at 5431.591 kb on + strand, within PP_4771 at 5431.592 kb on - strand, within PP_4771 at 5431.612 kb on + strand, within PP_4771 at 5431.703 kb on + strand, within PP_4771 at 5431.703 kb on + strand, within PP_4771 at 5431.792 kb on + strand, within PP_4771 at 5431.889 kb on + strand, within PP_4771 at 5432.130 kb on + strand at 5432.130 kb on + strand at 5432.131 kb on - strand at 5432.198 kb on + strand at 5432.198 kb on + strand at 5432.198 kb on + strand at 5432.199 kb on - strand, within PP_5713 at 5432.199 kb on - strand, within PP_5713 at 5432.199 kb on - strand, within PP_5713 at 5432.245 kb on + strand, within PP_5713 at 5432.245 kb on + strand, within PP_5713 at 5432.246 kb on - strand, within PP_5713 at 5432.246 kb on - strand, within PP_5713 at 5432.333 kb on + strand, within PP_5713 at 5432.404 kb on - strand, within PP_5713 at 5432.423 kb on + strand, within PP_5713 at 5432.424 kb on - strand, within PP_5713 at 5432.435 kb on + strand, within PP_5713 at 5432.435 kb on + strand, within PP_5713 at 5432.435 kb on + strand, within PP_5713 at 5432.436 kb on - strand, within PP_5713 at 5432.436 kb on - strand, within PP_5713 at 5432.436 kb on - strand, within PP_5713 at 5432.457 kb on - strand, within PP_5713 at 5432.459 kb on + strand, within PP_5713 at 5432.528 kb on + strand, within PP_5713 at 5432.529 kb on - strand, within PP_5713 at 5432.619 kb on + strand at 5432.619 kb on + strand at 5432.619 kb on + strand at 5432.620 kb on - strand at 5432.658 kb on + strand at 5432.658 kb on + strand at 5432.658 kb on + strand at 5432.659 kb on - strand at 5432.659 kb on - strand at 5432.796 kb on + strand at 5432.796 kb on + strand at 5432.841 kb on + strand at 5432.841 kb on + strand at 5432.842 kb on - strand at 5432.842 kb on - strand at 5433.162 kb on + strand, within PP_4772 at 5433.163 kb on - strand, within PP_4772 at 5433.163 kb on - strand, within PP_4772 at 5433.491 kb on + strand, within PP_4772 at 5433.531 kb on + strand, within PP_4772 at 5433.531 kb on + strand, within PP_4772 at 5433.532 kb on - strand, within PP_4772 at 5433.532 kb on - strand, within PP_4772 at 5433.532 kb on - strand, within PP_4772 at 5433.532 kb on - strand, within PP_4772
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1 remove 5,431,289 + -0.5 5,431,289 + +0.1 5,431,369 + -0.7 5,431,369 + -0.2 5,431,370 - +0.0 5,431,438 + -0.1 5,431,438 + -2.1 5,431,439 - +0.4 5,431,439 - +0.1 5,431,591 + PP_4771 0.28 +0.9 5,431,591 + PP_4771 0.28 -2.3 5,431,592 - PP_4771 0.28 -0.0 5,431,612 + PP_4771 0.32 +0.9 5,431,703 + PP_4771 0.45 -4.5 5,431,703 + PP_4771 0.45 -1.2 5,431,792 + PP_4771 0.59 -1.2 5,431,889 + PP_4771 0.74 +0.2 5,432,130 + -3.1 5,432,130 + +2.1 5,432,131 - -1.3 5,432,198 + -0.4 5,432,198 + -4.2 5,432,198 + -1.8 5,432,199 - PP_5713 0.10 +1.3 5,432,199 - PP_5713 0.10 -1.5 5,432,199 - PP_5713 0.10 +1.4 5,432,245 + PP_5713 0.19 -5.3 5,432,245 + PP_5713 0.19 -4.0 5,432,246 - PP_5713 0.19 -2.3 5,432,246 - PP_5713 0.19 -3.6 5,432,333 + PP_5713 0.36 -3.4 5,432,404 - PP_5713 0.50 -3.0 5,432,423 + PP_5713 0.53 +0.4 5,432,424 - PP_5713 0.53 +0.3 5,432,435 + PP_5713 0.55 -0.4 5,432,435 + PP_5713 0.55 -4.3 5,432,435 + PP_5713 0.55 -0.7 5,432,436 - PP_5713 0.56 -3.2 5,432,436 - PP_5713 0.56 -3.3 5,432,436 - PP_5713 0.56 +0.1 5,432,457 - PP_5713 0.60 -4.0 5,432,459 + PP_5713 0.60 +0.8 5,432,528 + PP_5713 0.73 -1.1 5,432,529 - PP_5713 0.74 -3.6 5,432,619 + -1.1 5,432,619 + +3.5 5,432,619 + +0.1 5,432,620 - +2.4 5,432,658 + -2.1 5,432,658 + -0.2 5,432,658 + -0.6 5,432,659 - -0.0 5,432,659 - +0.4 5,432,796 + -1.6 5,432,796 + -4.0 5,432,841 + +1.2 5,432,841 + +1.3 5,432,842 - +0.9 5,432,842 - +0.3 5,433,162 + PP_4772 0.17 +0.3 5,433,163 - PP_4772 0.17 +0.1 5,433,163 - PP_4772 0.17 +0.1 5,433,491 + PP_4772 0.30 +0.7 5,433,531 + PP_4772 0.31 -4.3 5,433,531 + PP_4772 0.31 +0.1 5,433,532 - PP_4772 0.32 +1.6 5,433,532 - PP_4772 0.32 +1.2 5,433,532 - PP_4772 0.32 +0.7 5,433,532 - PP_4772 0.32 +1.9
Or see this region's nucleotide sequence