Strain Fitness in Pseudomonas putida KT2440 around PP_4059

Experiment: P. putida Sci small MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4058 and PP_4059 overlap by 4 nucleotidesPP_4059 and PP_4060 are separated by 170 nucleotides PP_4058: PP_4058 - 1,4-alpha-glucan branching enzyme, at 4,577,900 to 4,580,110 _4058 PP_4059: PP_4059 - fused trehalose synthase B/maltokinase, at 4,580,107 to 4,583,427 _4059 PP_4060: PP_4060 - Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, at 4,583,598 to 4,585,583 _4060 Position (kb) 4580 4581 4582 4583 4584Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4579.177 kb on - strand, within PP_4058at 4579.231 kb on + strand, within PP_4058at 4579.251 kb on + strand, within PP_4058at 4579.251 kb on + strand, within PP_4058at 4579.251 kb on + strand, within PP_4058at 4579.251 kb on + strand, within PP_4058at 4579.252 kb on - strand, within PP_4058at 4579.287 kb on + strand, within PP_4058at 4579.371 kb on + strand, within PP_4058at 4579.372 kb on - strand, within PP_4058at 4579.372 kb on - strand, within PP_4058at 4579.440 kb on - strand, within PP_4058at 4579.440 kb on - strand, within PP_4058at 4579.505 kb on + strandat 4579.505 kb on + strand, within PP_4058at 4579.506 kb on - strand, within PP_4058at 4579.506 kb on - strand, within PP_4058at 4579.536 kb on + strand, within PP_4058at 4579.537 kb on - strand, within PP_4058at 4579.537 kb on - strand, within PP_4058at 4579.803 kb on + strand, within PP_4058at 4579.803 kb on + strand, within PP_4058at 4579.804 kb on - strand, within PP_4058at 4580.101 kb on + strandat 4580.102 kb on - strandat 4580.102 kb on - strandat 4580.127 kb on + strandat 4580.192 kb on + strandat 4580.192 kb on + strandat 4580.192 kb on + strandat 4580.192 kb on + strandat 4580.192 kb on + strandat 4580.193 kb on - strandat 4580.193 kb on - strandat 4580.193 kb on - strandat 4580.193 kb on - strandat 4580.196 kb on + strandat 4580.196 kb on + strandat 4580.197 kb on - strandat 4580.197 kb on - strandat 4580.197 kb on - strandat 4580.205 kb on - strandat 4580.205 kb on - strandat 4580.297 kb on + strandat 4580.298 kb on - strandat 4580.333 kb on + strandat 4580.334 kb on - strandat 4580.420 kb on + strandat 4580.421 kb on - strandat 4580.456 kb on + strand, within PP_4059at 4580.456 kb on + strand, within PP_4059at 4580.457 kb on - strand, within PP_4059at 4580.522 kb on + strand, within PP_4059at 4580.522 kb on + strand, within PP_4059at 4580.522 kb on + strand, within PP_4059at 4580.522 kb on + strand, within PP_4059at 4580.523 kb on - strand, within PP_4059at 4580.523 kb on - strand, within PP_4059at 4580.523 kb on - strand, within PP_4059at 4580.572 kb on + strand, within PP_4059at 4580.991 kb on - strand, within PP_4059at 4581.093 kb on - strand, within PP_4059at 4581.464 kb on + strand, within PP_4059at 4581.545 kb on + strand, within PP_4059at 4581.546 kb on - strand, within PP_4059at 4581.608 kb on + strand, within PP_4059at 4581.636 kb on + strand, within PP_4059at 4581.683 kb on - strand, within PP_4059at 4581.776 kb on + strand, within PP_4059at 4581.776 kb on + strand, within PP_4059at 4581.776 kb on + strand, within PP_4059at 4581.776 kb on + strand, within PP_4059at 4581.776 kb on + strand, within PP_4059at 4581.777 kb on - strandat 4581.777 kb on - strand, within PP_4059at 4581.811 kb on + strand, within PP_4059at 4581.812 kb on - strand, within PP_4059at 4581.863 kb on + strand, within PP_4059at 4581.864 kb on - strand, within PP_4059at 4581.951 kb on + strand, within PP_4059at 4581.953 kb on + strand, within PP_4059at 4581.965 kb on + strand, within PP_4059at 4581.965 kb on + strand, within PP_4059at 4581.966 kb on - strand, within PP_4059at 4581.966 kb on - strand, within PP_4059at 4581.966 kb on - strand, within PP_4059at 4581.966 kb on - strand, within PP_4059at 4582.000 kb on - strand, within PP_4059at 4582.121 kb on + strand, within PP_4059at 4582.121 kb on + strand, within PP_4059at 4582.121 kb on + strand, within PP_4059at 4582.238 kb on + strand, within PP_4059at 4582.238 kb on + strand, within PP_4059at 4582.238 kb on + strand, within PP_4059at 4582.239 kb on - strand, within PP_4059at 4582.239 kb on - strand, within PP_4059at 4582.242 kb on + strand, within PP_4059at 4582.242 kb on + strand, within PP_4059at 4582.242 kb on + strand, within PP_4059at 4582.242 kb on + strand, within PP_4059at 4582.242 kb on + strand, within PP_4059at 4582.242 kb on + strand, within PP_4059at 4582.243 kb on - strand, within PP_4059at 4582.243 kb on - strand, within PP_4059at 4582.243 kb on - strand, within PP_4059at 4582.243 kb on - strand, within PP_4059at 4582.243 kb on - strand, within PP_4059at 4582.243 kb on - strand, within PP_4059at 4582.258 kb on + strand, within PP_4059at 4582.258 kb on + strand, within PP_4059at 4582.259 kb on - strand, within PP_4059at 4582.259 kb on - strand, within PP_4059at 4582.259 kb on - strand, within PP_4059at 4582.271 kb on + strand, within PP_4059at 4582.272 kb on - strand, within PP_4059at 4582.324 kb on + strand, within PP_4059at 4582.324 kb on + strand, within PP_4059at 4582.325 kb on - strand, within PP_4059at 4582.325 kb on - strand, within PP_4059at 4582.406 kb on + strand, within PP_4059at 4582.406 kb on + strand, within PP_4059at 4582.407 kb on - strand, within PP_4059at 4582.407 kb on - strand, within PP_4059at 4582.409 kb on + strand, within PP_4059at 4582.410 kb on - strand, within PP_4059at 4582.568 kb on + strand, within PP_4059at 4582.568 kb on + strand, within PP_4059at 4582.568 kb on + strand, within PP_4059at 4582.569 kb on - strand, within PP_4059at 4582.569 kb on - strand, within PP_4059at 4582.569 kb on - strand, within PP_4059at 4582.569 kb on - strand, within PP_4059at 4582.635 kb on - strand, within PP_4059at 4582.691 kb on + strandat 4582.692 kb on - strand, within PP_4059at 4582.692 kb on - strand, within PP_4059at 4582.781 kb on + strand, within PP_4059at 4582.781 kb on + strand, within PP_4059at 4582.781 kb on + strand, within PP_4059at 4582.810 kb on + strand, within PP_4059at 4582.810 kb on + strand, within PP_4059at 4582.810 kb on + strand, within PP_4059at 4582.811 kb on - strand, within PP_4059at 4582.811 kb on - strand, within PP_4059at 4582.898 kb on + strand, within PP_4059at 4582.917 kb on - strand, within PP_4059at 4582.988 kb on + strand, within PP_4059at 4583.015 kb on + strand, within PP_4059at 4583.015 kb on + strand, within PP_4059at 4583.015 kb on + strand, within PP_4059at 4583.016 kb on - strand, within PP_4059at 4583.016 kb on - strand, within PP_4059at 4583.016 kb on - strand, within PP_4059at 4583.192 kb on + strandat 4583.192 kb on + strandat 4583.235 kb on - strandat 4583.278 kb on - strandat 4583.279 kb on + strandat 4583.379 kb on - strandat 4583.482 kb on - strandat 4583.493 kb on + strandat 4583.556 kb on + strandat 4583.556 kb on + strandat 4583.568 kb on + strandat 4583.568 kb on + strandat 4583.569 kb on - strandat 4583.599 kb on + strandat 4583.650 kb on - strandat 4583.650 kb on - strandat 4583.650 kb on - strandat 4583.812 kb on + strand, within PP_4060at 4583.813 kb on - strand, within PP_4060at 4583.813 kb on - strand, within PP_4060at 4583.813 kb on - strand, within PP_4060at 4583.831 kb on + strand, within PP_4060at 4583.832 kb on - strand, within PP_4060at 4583.845 kb on + strand, within PP_4060at 4583.845 kb on + strand, within PP_4060at 4583.922 kb on - strand, within PP_4060at 4583.922 kb on - strand, within PP_4060at 4583.990 kb on - strand, within PP_4060at 4583.990 kb on - strand, within PP_4060at 4584.007 kb on + strand, within PP_4060at 4584.008 kb on - strand, within PP_4060at 4584.058 kb on + strand, within PP_4060at 4584.058 kb on + strand, within PP_4060at 4584.058 kb on + strand, within PP_4060at 4584.058 kb on + strandat 4584.059 kb on - strand, within PP_4060at 4584.059 kb on - strand, within PP_4060at 4584.059 kb on - strand, within PP_4060at 4584.059 kb on - strand, within PP_4060at 4584.059 kb on - strand, within PP_4060at 4584.059 kb on - strand, within PP_4060at 4584.158 kb on + strand, within PP_4060at 4584.158 kb on + strand, within PP_4060at 4584.159 kb on - strand, within PP_4060at 4584.259 kb on + strand, within PP_4060at 4584.259 kb on + strand, within PP_4060at 4584.259 kb on + strand, within PP_4060at 4584.260 kb on - strand, within PP_4060at 4584.263 kb on + strand, within PP_4060at 4584.263 kb on + strandat 4584.263 kb on + strand, within PP_4060at 4584.263 kb on + strand, within PP_4060at 4584.264 kb on - strand, within PP_4060at 4584.264 kb on - strand, within PP_4060at 4584.265 kb on + strand, within PP_4060at 4584.265 kb on + strand, within PP_4060at 4584.265 kb on + strand, within PP_4060at 4584.265 kb on + strand, within PP_4060at 4584.265 kb on + strand, within PP_4060at 4584.265 kb on + strand, within PP_4060at 4584.265 kb on + strand, within PP_4060at 4584.265 kb on + strand, within PP_4060at 4584.266 kb on - strand, within PP_4060at 4584.266 kb on - strand, within PP_4060at 4584.266 kb on - strand, within PP_4060at 4584.266 kb on - strand, within PP_4060at 4584.266 kb on - strand, within PP_4060at 4584.266 kb on - strand, within PP_4060at 4584.318 kb on - strand, within PP_4060

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1
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4,579,177 - PP_4058 0.58 -1.5
4,579,231 + PP_4058 0.60 +3.2
4,579,251 + PP_4058 0.61 -2.0
4,579,251 + PP_4058 0.61 -2.5
4,579,251 + PP_4058 0.61 -2.3
4,579,251 + PP_4058 0.61 -1.5
4,579,252 - PP_4058 0.61 -1.0
4,579,287 + PP_4058 0.63 -2.3
4,579,371 + PP_4058 0.67 -1.5
4,579,372 - PP_4058 0.67 -1.0
4,579,372 - PP_4058 0.67 -3.0
4,579,440 - PP_4058 0.70 -1.8
4,579,440 - PP_4058 0.70 -2.0
4,579,505 + +0.5
4,579,505 + PP_4058 0.73 -1.5
4,579,506 - PP_4058 0.73 +0.5
4,579,506 - PP_4058 0.73 -0.5
4,579,536 + PP_4058 0.74 -1.8
4,579,537 - PP_4058 0.74 -2.0
4,579,537 - PP_4058 0.74 -2.5
4,579,803 + PP_4058 0.86 -1.8
4,579,803 + PP_4058 0.86 -2.3
4,579,804 - PP_4058 0.86 -2.9
4,580,101 + +0.5
4,580,102 - -2.0
4,580,102 - +2.4
4,580,127 + -1.8
4,580,192 + +2.4
4,580,192 + -4.0
4,580,192 + +0.5
4,580,192 + -3.6
4,580,192 + +0.4
4,580,193 - -2.6
4,580,193 - -3.3
4,580,193 - +0.9
4,580,193 - -0.7
4,580,196 + -0.4
4,580,196 + -3.8
4,580,197 - -0.5
4,580,197 - -3.8
4,580,197 - +1.7
4,580,205 - -0.2
4,580,205 - +1.4
4,580,297 + +2.0
4,580,298 - -0.0
4,580,333 + -1.6
4,580,334 - -2.9
4,580,420 + +1.3
4,580,421 - +1.2
4,580,456 + PP_4059 0.11 +0.9
4,580,456 + PP_4059 0.11 +1.0
4,580,457 - PP_4059 0.11 -3.8
4,580,522 + PP_4059 0.12 +0.3
4,580,522 + PP_4059 0.12 +1.3
4,580,522 + PP_4059 0.12 -4.4
4,580,522 + PP_4059 0.12 +1.1
4,580,523 - PP_4059 0.13 -1.0
4,580,523 - PP_4059 0.13 +0.3
4,580,523 - PP_4059 0.13 +0.2
4,580,572 + PP_4059 0.14 -3.7
4,580,991 - PP_4059 0.27 +1.8
4,581,093 - PP_4059 0.30 -1.1
4,581,464 + PP_4059 0.41 +2.6
4,581,545 + PP_4059 0.43 +1.3
4,581,546 - PP_4059 0.43 -0.0
4,581,608 + PP_4059 0.45 -3.6
4,581,636 + PP_4059 0.46 +0.0
4,581,683 - PP_4059 0.47 -0.4
4,581,776 + PP_4059 0.50 +0.0
4,581,776 + PP_4059 0.50 -4.3
4,581,776 + PP_4059 0.50 -2.9
4,581,776 + PP_4059 0.50 +2.1
4,581,776 + PP_4059 0.50 -3.8
4,581,777 - +0.6
4,581,777 - PP_4059 0.50 -2.6
4,581,811 + PP_4059 0.51 +1.0
4,581,812 - PP_4059 0.51 -3.6
4,581,863 + PP_4059 0.53 -0.2
4,581,864 - PP_4059 0.53 -3.4
4,581,951 + PP_4059 0.56 +1.2
4,581,953 + PP_4059 0.56 -1.1
4,581,965 + PP_4059 0.56 -3.8
4,581,965 + PP_4059 0.56 -4.1
4,581,966 - PP_4059 0.56 -3.6
4,581,966 - PP_4059 0.56 +1.6
4,581,966 - PP_4059 0.56 -2.6
4,581,966 - PP_4059 0.56 -3.5
4,582,000 - PP_4059 0.57 +1.3
4,582,121 + PP_4059 0.61 -0.0
4,582,121 + PP_4059 0.61 -2.9
4,582,121 + PP_4059 0.61 +1.3
4,582,238 + PP_4059 0.64 -3.4
4,582,238 + PP_4059 0.64 +0.6
4,582,238 + PP_4059 0.64 +0.6
4,582,239 - PP_4059 0.64 -4.1
4,582,239 - PP_4059 0.64 +1.1
4,582,242 + PP_4059 0.64 +1.1
4,582,242 + PP_4059 0.64 -0.9
4,582,242 + PP_4059 0.64 -1.0
4,582,242 + PP_4059 0.64 -2.9
4,582,242 + PP_4059 0.64 -4.0
4,582,242 + PP_4059 0.64 -3.5
4,582,243 - PP_4059 0.64 -4.0
4,582,243 - PP_4059 0.64 +0.2
4,582,243 - PP_4059 0.64 -3.3
4,582,243 - PP_4059 0.64 -3.8
4,582,243 - PP_4059 0.64 -0.8
4,582,243 - PP_4059 0.64 -3.5
4,582,258 + PP_4059 0.65 -0.9
4,582,258 + PP_4059 0.65 +4.0
4,582,259 - PP_4059 0.65 -4.4
4,582,259 - PP_4059 0.65 -4.4
4,582,259 - PP_4059 0.65 -3.3
4,582,271 + PP_4059 0.65 -0.1
4,582,272 - PP_4059 0.65 -3.4
4,582,324 + PP_4059 0.67 -3.0
4,582,324 + PP_4059 0.67 +1.9
4,582,325 - PP_4059 0.67 -4.1
4,582,325 - PP_4059 0.67 -3.4
4,582,406 + PP_4059 0.69 -3.3
4,582,406 + PP_4059 0.69 +0.4
4,582,407 - PP_4059 0.69 +1.1
4,582,407 - PP_4059 0.69 -2.6
4,582,409 + PP_4059 0.69 +1.6
4,582,410 - PP_4059 0.69 -2.6
4,582,568 + PP_4059 0.74 +1.3
4,582,568 + PP_4059 0.74 -4.0
4,582,568 + PP_4059 0.74 +0.3
4,582,569 - PP_4059 0.74 +2.1
4,582,569 - PP_4059 0.74 -2.8
4,582,569 - PP_4059 0.74 -2.8
4,582,569 - PP_4059 0.74 -0.3
4,582,635 - PP_4059 0.76 -3.0
4,582,691 + +0.6
4,582,692 - PP_4059 0.78 -3.5
4,582,692 - PP_4059 0.78 +0.2
4,582,781 + PP_4059 0.81 -2.9
4,582,781 + PP_4059 0.81 -2.6
4,582,781 + PP_4059 0.81 -2.6
4,582,810 + PP_4059 0.81 -4.1
4,582,810 + PP_4059 0.81 +1.9
4,582,810 + PP_4059 0.81 -2.6
4,582,811 - PP_4059 0.81 -3.9
4,582,811 - PP_4059 0.81 -3.4
4,582,898 + PP_4059 0.84 -3.5
4,582,917 - PP_4059 0.85 +0.0
4,582,988 + PP_4059 0.87 -0.4
4,583,015 + PP_4059 0.88 -0.4
4,583,015 + PP_4059 0.88 -4.2
4,583,015 + PP_4059 0.88 -2.4
4,583,016 - PP_4059 0.88 -4.0
4,583,016 - PP_4059 0.88 +2.3
4,583,016 - PP_4059 0.88 -3.4
4,583,192 + -0.1
4,583,192 + +0.4
4,583,235 - -2.9
4,583,278 - +2.2
4,583,279 + -0.3
4,583,379 - -3.4
4,583,482 - +0.7
4,583,493 + -2.0
4,583,556 + -3.5
4,583,556 + +1.1
4,583,568 + +0.7
4,583,568 + -0.4
4,583,569 - +2.0
4,583,599 + +0.7
4,583,650 - -1.8
4,583,650 - +1.9
4,583,650 - -3.6
4,583,812 + PP_4060 0.11 +0.0
4,583,813 - PP_4060 0.11 +2.6
4,583,813 - PP_4060 0.11 -1.8
4,583,813 - PP_4060 0.11 -4.3
4,583,831 + PP_4060 0.12 -3.6
4,583,832 - PP_4060 0.12 -2.3
4,583,845 + PP_4060 0.12 -3.1
4,583,845 + PP_4060 0.12 +0.7
4,583,922 - PP_4060 0.16 +1.2
4,583,922 - PP_4060 0.16 +2.8
4,583,990 - PP_4060 0.20 +0.9
4,583,990 - PP_4060 0.20 +2.1
4,584,007 + PP_4060 0.21 -0.8
4,584,008 - PP_4060 0.21 +0.8
4,584,058 + PP_4060 0.23 +0.7
4,584,058 + PP_4060 0.23 -1.3
4,584,058 + PP_4060 0.23 -2.0
4,584,058 + +3.1
4,584,059 - PP_4060 0.23 -1.8
4,584,059 - PP_4060 0.23 +2.0
4,584,059 - PP_4060 0.23 -2.0
4,584,059 - PP_4060 0.23 -4.4
4,584,059 - PP_4060 0.23 -2.8
4,584,059 - PP_4060 0.23 -1.4
4,584,158 + PP_4060 0.28 -3.5
4,584,158 + PP_4060 0.28 -0.0
4,584,159 - PP_4060 0.28 -4.1
4,584,259 + PP_4060 0.33 -2.3
4,584,259 + PP_4060 0.33 -4.1
4,584,259 + PP_4060 0.33 -2.3
4,584,260 - PP_4060 0.33 +1.7
4,584,263 + PP_4060 0.33 +1.1
4,584,263 + +0.6
4,584,263 + PP_4060 0.33 +0.2
4,584,263 + PP_4060 0.33 -0.7
4,584,264 - PP_4060 0.34 +1.2
4,584,264 - PP_4060 0.34 +0.7
4,584,265 + PP_4060 0.34 -0.9
4,584,265 + PP_4060 0.34 +2.6
4,584,265 + PP_4060 0.34 -2.8
4,584,265 + PP_4060 0.34 -3.3
4,584,265 + PP_4060 0.34 +2.6
4,584,265 + PP_4060 0.34 +0.0
4,584,265 + PP_4060 0.34 -3.4
4,584,265 + PP_4060 0.34 -3.8
4,584,266 - PP_4060 0.34 -3.3
4,584,266 - PP_4060 0.34 +1.6
4,584,266 - PP_4060 0.34 -0.4
4,584,266 - PP_4060 0.34 -3.3
4,584,266 - PP_4060 0.34 -2.0
4,584,266 - PP_4060 0.34 +2.5
4,584,318 - PP_4060 0.36 -1.8

Or see this region's nucleotide sequence