Strain Fitness in Pseudomonas putida KT2440 around PP_1805

Experiment: P. putida Sci small MOI 0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida Sci small MOI 0.1
2,027,275	-				+6.3
2,027,315	+		PP_1804	0.10	+8.2
2,027,315	+		PP_1804	0.10	+6.1
2,027,315	+		PP_1804	0.10	+4.9
2,027,325	-		PP_1804	0.11	+6.3
2,027,465	-		PP_1804	0.25	+6.6
2,027,628	+		PP_1804	0.41	+5.0
2,027,628	+		PP_1804	0.41	+5.4
2,027,629	-		PP_1804	0.42	+7.3
2,027,727	+		PP_1804	0.51	+4.5
2,027,728	-		PP_1804	0.51	+6.4
2,027,771	-		PP_1804	0.56	+6.4
2,027,771	-		PP_1804	0.56	+6.7
2,027,771	-		PP_1804	0.56	+8.0
2,027,822	+		PP_1804	0.61	+5.4
2,027,823	-		PP_1804	0.61	+3.4
2,027,823	-		PP_1804	0.61	+6.5
2,027,906	-		PP_1804	0.69	+7.2
2,027,908	+		PP_1804	0.69	+5.2
2,027,909	-		PP_1804	0.69	+7.3
2,027,924	-		PP_1804	0.71	+6.2
2,027,926	+		PP_1804	0.71	+5.4
2,027,926	+		PP_1804	0.71	+4.5
2,027,939	-		PP_1804	0.72	+6.7
2,027,997	+		PP_1804	0.78	+5.8
2,027,998	-		PP_1804	0.78	+5.6
2,028,021	+		PP_1804	0.81	+5.5
2,028,022	-		PP_1804	0.81	+7.1
2,028,022	-		PP_1804	0.81	+6.1
2,028,022	-		PP_1804	0.81	+5.8
2,028,022	-		PP_1804	0.81	+6.1
2,028,027	+		PP_1804	0.81	+6.0
2,028,080	+		PP_1804	0.86	+5.0
2,028,084	-		PP_1804	0.87	+6.8
2,028,084	-		PP_1804	0.87	+5.8
2,028,119	-				+5.8
2,028,162	+				+5.3
2,028,162	+				+2.9
2,028,163	-				+7.4
2,028,176	-				+6.1
2,028,192	+				+6.1
2,028,192	+				+1.5
2,028,193	-				+6.0
2,028,193	-				+6.1
2,028,214	-				+4.7
2,028,214	-				+5.5
2,028,214	-				+5.8
2,028,214	-				+5.0
2,028,214	-				+6.6
2,028,240	+				+2.2
2,028,241	-				+6.9
2,028,241	-				+6.4
2,028,241	-				+6.3
2,028,351	+				+3.8
2,028,352	-				+6.2
2,028,355	+				+5.9
2,028,355	+				+4.6
2,028,355	+				+5.7
2,028,355	+				+5.1
2,028,355	+				+4.2
2,028,355	+				+5.2
2,028,356	-				+6.3
2,028,356	-				+5.8
2,028,356	-				+5.9
2,028,356	-				+7.0
2,028,356	-				+6.7
2,028,359	+				+6.7
2,028,359	+				+7.2
2,028,359	+				+4.2
2,028,359	+				+4.7
2,028,359	+				+5.9
2,028,359	+				+6.6
2,028,360	-				+5.7
2,028,360	-				+6.9
2,028,427	+				+5.2
2,028,441	-				+5.0
2,028,468	+		PP_1805	0.10	+6.1
2,028,469	-		PP_1805	0.10	+5.9
2,028,517	+		PP_1805	0.12	+5.0
2,028,517	+		PP_1805	0.12	+5.1
2,028,549	+		PP_1805	0.14	+5.5
2,028,550	-		PP_1805	0.14	+6.9
2,028,550	-		PP_1805	0.14	+6.6
2,028,596	+		PP_1805	0.16	+4.9
2,028,597	-		PP_1805	0.16	+5.4
2,028,642	+		PP_1805	0.18	+6.3
2,028,642	+		PP_1805	0.18	+3.6
2,028,643	-		PP_1805	0.18	+7.0
2,028,643	-		PP_1805	0.18	+4.5
2,028,643	-		PP_1805	0.18	+5.6
2,028,664	+		PP_1805	0.19	+5.4
2,028,664	+		PP_1805	0.19	+5.4
2,028,693	+		PP_1805	0.21	+3.6
2,028,693	+		PP_1805	0.21	+4.3
2,028,693	+		PP_1805	0.21	+5.6
2,028,693	+		PP_1805	0.21	+5.1
2,028,693	+		PP_1805	0.21	+4.5
2,028,694	-		PP_1805	0.21	+7.9
2,028,727	+		PP_1805	0.23	+5.4
2,028,728	-		PP_1805	0.23	+6.4
2,028,747	+		PP_1805	0.24	+5.1
2,028,784	+		PP_1805	0.25	+6.0
2,028,785	-		PP_1805	0.25	+6.1
2,028,821	-		PP_1805	0.27	+6.6
2,028,828	+		PP_1805	0.27	+5.6
2,028,828	+		PP_1805	0.27	+5.5
2,028,828	+		PP_1805	0.27	+6.1
2,028,829	-		PP_1805	0.27	+6.0
2,028,829	-		PP_1805	0.27	+6.1
2,028,829	-		PP_1805	0.27	+5.8
2,028,829	-		PP_1805	0.27	+7.0
2,028,829	-		PP_1805	0.27	+6.7
2,028,829	-		PP_1805	0.27	+6.7
2,028,829	-		PP_1805	0.27	+6.5
2,028,829	-		PP_1805	0.27	+6.5
2,028,829	-		PP_1805	0.27	+6.2
2,028,954	+		PP_1805	0.34	+5.1
2,028,954	+		PP_1805	0.34	+4.6
2,028,954	+		PP_1805	0.34	+5.2
2,028,955	-		PP_1805	0.34	+7.2
2,028,955	-		PP_1805	0.34	+5.1
2,029,285	+		PP_1805	0.50	+6.3
2,029,286	-		PP_1805	0.50	+6.3
2,029,286	-		PP_1805	0.50	+5.5
2,029,329	+		PP_1805	0.52	+5.5
2,029,330	-		PP_1805	0.52	+5.9
2,029,330	-		PP_1805	0.52	+6.4
2,029,338	+		PP_1805	0.52	+6.9
2,029,338	+		PP_1805	0.52	+7.5
2,029,338	+		PP_1805	0.52	+6.3
2,029,338	+		PP_1805	0.52	+6.4
2,029,339	-		PP_1805	0.52	+6.1
2,029,445	+		PP_1805	0.57	+6.3
2,029,445	+		PP_1805	0.57	+6.3
2,029,445	+		PP_1805	0.57	+5.2
2,029,445	+		PP_1805	0.57	+6.6
2,029,445	+		PP_1805	0.57	+6.4
2,029,446	-		PP_1805	0.57	+6.7
2,029,474	-		PP_1805	0.59	+5.7
2,029,474	-		PP_1805	0.59	+6.1
2,029,474	-		PP_1805	0.59	+4.8
2,029,529	+		PP_1805	0.61	+7.3
2,029,529	+		PP_1805	0.61	+6.4
2,029,530	-		PP_1805	0.61	+6.1
2,029,530	-		PP_1805	0.61	+6.8
2,029,532	-		PP_1805	0.61	+5.1
2,029,532	-		PP_1805	0.61	+6.3
2,029,532	-		PP_1805	0.61	+6.5
2,029,532	-		PP_1805	0.61	+7.1
2,029,532	-		PP_1805	0.61	+6.1
2,029,532	-		PP_1805	0.61	+6.4
2,029,532	-		PP_1805	0.61	+5.8
2,029,604	+		PP_1805	0.65	+5.2
2,029,604	+		PP_1805	0.65	+8.0
2,029,605	-		PP_1805	0.65	+6.2
2,029,684	+		PP_1805	0.69	+6.9
2,029,684	+				+5.6
2,029,710	+		PP_1805	0.70	+5.2
2,029,710	+		PP_1805	0.70	+6.3
2,029,710	+		PP_1805	0.70	+6.3
2,029,710	+		PP_1805	0.70	+6.4
2,029,710	+		PP_1805	0.70	+6.6
2,029,711	-		PP_1805	0.70	+6.5
2,029,711	-		PP_1805	0.70	+7.0
2,029,711	-		PP_1805	0.70	+7.1
2,029,841	+		PP_1805	0.76	+4.4
2,029,842	-		PP_1805	0.76	+5.4
2,029,842	-		PP_1805	0.76	+6.0
2,029,842	-		PP_1805	0.76	+6.4
2,029,842	-		PP_1805	0.76	+6.3
2,029,842	-		PP_1805	0.76	+6.0
2,029,862	+		PP_1805	0.77	+6.9
2,029,881	-		PP_1805	0.78	+6.4
2,029,881	-		PP_1805	0.78	+5.7
2,029,939	+		PP_1805	0.81	+7.2
2,029,939	+		PP_1805	0.81	+8.6
2,029,939	+		PP_1805	0.81	+8.2
2,029,940	-		PP_1805	0.81	+5.7
2,029,940	-		PP_1805	0.81	+6.2
2,029,940	-		PP_1805	0.81	+5.9
2,029,940	-		PP_1805	0.81	+6.4
2,030,013	-		PP_1805	0.85	+5.5
2,030,017	+		PP_1805	0.85	+6.2
2,030,017	+		PP_1805	0.85	+6.8
2,030,017	+		PP_1805	0.85	+8.8
2,030,017	+		PP_1805	0.85	+5.9
2,030,018	-		PP_1805	0.85	+6.4
2,030,018	-		PP_1805	0.85	+6.3
2,030,021	+		PP_1805	0.85	+5.6
2,030,022	-				+6.0
2,030,160	+				+6.6
2,030,161	-				+6.5
2,030,161	-				+6.9
2,030,161	-				+6.5
2,030,161	-				+7.2
2,030,189	+				+5.8
2,030,189	+				+7.0
2,030,190	-				+6.2
2,030,190	-				+5.5
2,030,190	-				+6.7
2,030,200	+				+6.3
2,030,201	-				+7.0
2,030,257	+				+3.6
2,030,257	+				+5.7
2,030,258	-				+7.3
2,030,268	+				+5.2
2,030,269	-				+4.9
2,030,521	-		PP_1806	0.15	-0.7
2,030,571	+		PP_1806	0.21	-2.5
2,030,572	-		PP_1806	0.21	-2.2
2,030,665	+		PP_1806	0.31	+0.1
2,030,666	-		PP_1806	0.31	-3.1
2,030,790	+		PP_1806	0.44	-3.7
2,030,791	-		PP_1806	0.44	+0.1
2,030,821	-		PP_1806	0.47	+0.5
2,030,969	+		PP_1806	0.62	+0.3
2,031,081	+		PP_1806	0.74	-2.7
2,031,096	+		PP_1806	0.76	-0.0
2,031,161	+		PP_1806	0.82	-2.7
2,031,229	+		PP_1806	0.90	+0.9
2,031,229	+		PP_1806	0.90	+0.3
2,031,229	+		PP_1806	0.90	+0.3
2,031,229	+		PP_1806	0.90	+0.3
2,031,229	+		PP_1806	0.90	+2.2
2,031,230	-		PP_1806	0.90	-3.4
2,031,230	-		PP_1806	0.90	-3.1