Experiment: P. putida Sci small MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0816 and PP_0817 are separated by 312 nucleotides PP_0817 and PP_0818 are separated by 113 nucleotides
PP_0816: PP_0816 - protoheme IX farnesyltransferase, at 954,159 to 955,046
_0816
PP_0817: PP_0817 - aminotransferase, at 955,359 to 956,567
_0817
PP_0818: PP_0818 - conserved protein of unknown function, at 956,681 to 957,808
_0818
Position (kb) 955
956
957 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 955.035 kb on + strand at 955.036 kb on - strand at 955.036 kb on - strand at 955.036 kb on - strand at 955.036 kb on - strand at 955.145 kb on + strand at 955.145 kb on + strand at 955.145 kb on + strand at 955.159 kb on - strand at 955.159 kb on - strand at 955.340 kb on + strand at 955.340 kb on + strand at 955.340 kb on + strand at 955.341 kb on - strand at 955.414 kb on - strand at 955.534 kb on + strand, within PP_0817 at 955.535 kb on - strand, within PP_0817 at 955.535 kb on - strand, within PP_0817 at 955.618 kb on - strand, within PP_0817 at 955.618 kb on - strand, within PP_0817 at 955.630 kb on - strand, within PP_0817 at 955.727 kb on + strand, within PP_0817 at 955.768 kb on - strand, within PP_0817 at 955.965 kb on + strand, within PP_0817 at 955.965 kb on + strand, within PP_0817 at 955.966 kb on - strand, within PP_0817 at 955.966 kb on - strand, within PP_0817 at 955.966 kb on - strand, within PP_0817 at 955.972 kb on + strand, within PP_0817 at 955.972 kb on + strand, within PP_0817 at 955.973 kb on - strand, within PP_0817 at 955.973 kb on - strand, within PP_0817 at 955.995 kb on + strand, within PP_0817 at 956.094 kb on + strand, within PP_0817 at 956.094 kb on + strand, within PP_0817 at 956.094 kb on + strand, within PP_0817 at 956.172 kb on + strand, within PP_0817 at 956.172 kb on + strand, within PP_0817 at 956.172 kb on + strand, within PP_0817 at 956.343 kb on + strand, within PP_0817 at 956.343 kb on + strand, within PP_0817 at 956.343 kb on + strand, within PP_0817 at 956.343 kb on + strand, within PP_0817 at 956.370 kb on + strand, within PP_0817 at 956.458 kb on - strand at 956.565 kb on + strand at 956.645 kb on - strand at 956.782 kb on + strand at 956.996 kb on + strand, within PP_0818 at 956.997 kb on - strand, within PP_0818 at 957.068 kb on + strand, within PP_0818 at 957.240 kb on + strand, within PP_0818 at 957.252 kb on + strand, within PP_0818 at 957.252 kb on + strand, within PP_0818 at 957.252 kb on + strand, within PP_0818 at 957.252 kb on + strand, within PP_0818 at 957.253 kb on - strand, within PP_0818 at 957.253 kb on - strand, within PP_0818 at 957.253 kb on - strand, within PP_0818 at 957.253 kb on - strand, within PP_0818 at 957.253 kb on - strand, within PP_0818 at 957.253 kb on - strand, within PP_0818 at 957.253 kb on - strand, within PP_0818 at 957.288 kb on + strand, within PP_0818 at 957.288 kb on + strand, within PP_0818 at 957.289 kb on - strand, within PP_0818 at 957.317 kb on - strand, within PP_0818 at 957.317 kb on - strand, within PP_0818 at 957.330 kb on - strand, within PP_0818 at 957.330 kb on - strand, within PP_0818 at 957.330 kb on - strand, within PP_0818 at 957.333 kb on + strand, within PP_0818 at 957.333 kb on + strand, within PP_0818 at 957.334 kb on - strand, within PP_0818 at 957.334 kb on - strand, within PP_0818 at 957.334 kb on - strand, within PP_0818 at 957.334 kb on - strand, within PP_0818 at 957.341 kb on + strand, within PP_0818 at 957.342 kb on - strand, within PP_0818 at 957.409 kb on - strand, within PP_0818 at 957.409 kb on - strand, within PP_0818
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1 remove 955,035 + -0.1 955,036 - -2.9 955,036 - -2.1 955,036 - -1.9 955,036 - -1.9 955,145 + +1.6 955,145 + +1.0 955,145 + -0.2 955,159 - -0.1 955,159 - -3.0 955,340 + -1.5 955,340 + +0.8 955,340 + +0.1 955,341 - -0.3 955,414 - +0.7 955,534 + PP_0817 0.14 -1.1 955,535 - PP_0817 0.15 -0.0 955,535 - PP_0817 0.15 +1.6 955,618 - PP_0817 0.21 +1.5 955,618 - PP_0817 0.21 +0.3 955,630 - PP_0817 0.22 -3.4 955,727 + PP_0817 0.30 +0.9 955,768 - PP_0817 0.34 -4.4 955,965 + PP_0817 0.50 +2.1 955,965 + PP_0817 0.50 -4.2 955,966 - PP_0817 0.50 +2.2 955,966 - PP_0817 0.50 -0.7 955,966 - PP_0817 0.50 +2.0 955,972 + PP_0817 0.51 +0.9 955,972 + PP_0817 0.51 +0.8 955,973 - PP_0817 0.51 +1.2 955,973 - PP_0817 0.51 -0.6 955,995 + PP_0817 0.53 +1.0 956,094 + PP_0817 0.61 -0.7 956,094 + PP_0817 0.61 +0.8 956,094 + PP_0817 0.61 +1.6 956,172 + PP_0817 0.67 +0.8 956,172 + PP_0817 0.67 -0.5 956,172 + PP_0817 0.67 +0.3 956,343 + PP_0817 0.81 +0.9 956,343 + PP_0817 0.81 -4.1 956,343 + PP_0817 0.81 +0.7 956,343 + PP_0817 0.81 +1.7 956,370 + PP_0817 0.84 +1.3 956,458 - +0.2 956,565 + +0.0 956,645 - -0.2 956,782 + -4.0 956,996 + PP_0818 0.28 -3.5 956,997 - PP_0818 0.28 -0.4 957,068 + PP_0818 0.34 -0.2 957,240 + PP_0818 0.50 +0.6 957,252 + PP_0818 0.51 -1.2 957,252 + PP_0818 0.51 -4.0 957,252 + PP_0818 0.51 -0.6 957,252 + PP_0818 0.51 +1.5 957,253 - PP_0818 0.51 -3.1 957,253 - PP_0818 0.51 -0.2 957,253 - PP_0818 0.51 -0.7 957,253 - PP_0818 0.51 -3.7 957,253 - PP_0818 0.51 +2.4 957,253 - PP_0818 0.51 -4.8 957,253 - PP_0818 0.51 +0.6 957,288 + PP_0818 0.54 -4.4 957,288 + PP_0818 0.54 -0.5 957,289 - PP_0818 0.54 +0.4 957,317 - PP_0818 0.56 -4.7 957,317 - PP_0818 0.56 -3.5 957,330 - PP_0818 0.58 -3.6 957,330 - PP_0818 0.58 -2.2 957,330 - PP_0818 0.58 -1.9 957,333 + PP_0818 0.58 -0.0 957,333 + PP_0818 0.58 -0.6 957,334 - PP_0818 0.58 +0.9 957,334 - PP_0818 0.58 -1.3 957,334 - PP_0818 0.58 +1.4 957,334 - PP_0818 0.58 -0.3 957,341 + PP_0818 0.59 -2.8 957,342 - PP_0818 0.59 +1.2 957,409 - PP_0818 0.65 +0.2 957,409 - PP_0818 0.65 -4.0
Or see this region's nucleotide sequence