Experiment: P. putida Sci small MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0656 and PP_0657 overlap by 4 nucleotides PP_0657 and PP_0658 are separated by 61 nucleotides PP_0658 and PP_0659 are separated by 167 nucleotides
PP_0656: PP_0656 - putative Amino acid ABC transporter, permease protein, at 763,699 to 764,520
_0656
PP_0657: PP_0657 - putative Amino acid ABC transporter, periplasmic amino acid-binding protein, at 764,517 to 765,344
_0657
PP_0658: PP_0658 - Homocysteine S-methyltransferase family protein, at 765,406 to 766,341
_0658
PP_0659: PP_0659 - Cystathionine gamma-synthase, at 766,509 to 767,780
_0659
Position (kb) 765
766
767 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 764.527 kb on - strand at 764.601 kb on + strand, within PP_0657 at 764.601 kb on + strand, within PP_0657 at 764.660 kb on - strand, within PP_0657 at 764.729 kb on + strand, within PP_0657 at 764.730 kb on - strand, within PP_0657 at 764.797 kb on + strand, within PP_0657 at 764.798 kb on - strand, within PP_0657 at 764.878 kb on + strand, within PP_0657 at 764.879 kb on - strand, within PP_0657 at 764.887 kb on + strand, within PP_0657 at 764.989 kb on + strand, within PP_0657 at 764.993 kb on - strand, within PP_0657 at 764.993 kb on - strand, within PP_0657 at 765.303 kb on + strand at 765.303 kb on + strand at 765.304 kb on - strand at 765.304 kb on - strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.340 kb on + strand at 765.341 kb on - strand at 765.341 kb on - strand at 765.341 kb on - strand at 765.344 kb on + strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.351 kb on + strand at 765.352 kb on - strand at 765.376 kb on + strand at 765.381 kb on - strand at 765.383 kb on + strand at 765.384 kb on - strand at 765.404 kb on + strand at 765.440 kb on - strand at 765.441 kb on + strand at 765.441 kb on + strand at 765.441 kb on + strand at 765.442 kb on - strand at 765.462 kb on - strand at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.622 kb on + strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.623 kb on - strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.629 kb on + strand, within PP_0658 at 765.720 kb on + strand, within PP_0658 at 765.721 kb on - strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.056 kb on + strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.057 kb on - strand, within PP_0658 at 766.390 kb on - strand at 766.447 kb on + strand at 766.448 kb on - strand at 766.448 kb on - strand at 766.448 kb on - strand at 766.449 kb on + strand at 766.449 kb on + strand at 766.449 kb on + strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.450 kb on - strand at 766.480 kb on + strand at 766.481 kb on - strand at 766.481 kb on - strand at 766.585 kb on + strand at 766.585 kb on + strand at 766.585 kb on + strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.586 kb on - strand at 766.596 kb on + strand at 766.596 kb on + strand at 766.596 kb on + strand at 766.597 kb on - strand at 766.597 kb on - strand at 766.597 kb on - strand at 766.635 kb on + strand at 766.636 kb on - strand at 766.636 kb on - strand at 766.642 kb on - strand, within PP_0659 at 766.642 kb on - strand, within PP_0659 at 766.662 kb on + strand, within PP_0659 at 766.663 kb on - strand, within PP_0659 at 766.663 kb on - strand, within PP_0659 at 766.698 kb on + strand, within PP_0659 at 766.699 kb on - strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.863 kb on + strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.864 kb on - strand, within PP_0659 at 766.932 kb on - strand, within PP_0659 at 766.986 kb on + strand, within PP_0659 at 766.986 kb on + strand, within PP_0659 at 766.987 kb on - strand, within PP_0659 at 767.291 kb on + strand, within PP_0659 at 767.291 kb on + strand, within PP_0659
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1 remove 764,527 - -2.3 764,601 + PP_0657 0.10 -3.9 764,601 + PP_0657 0.10 +0.5 764,660 - PP_0657 0.17 -0.1 764,729 + PP_0657 0.26 -0.4 764,730 - PP_0657 0.26 -0.2 764,797 + PP_0657 0.34 -4.3 764,798 - PP_0657 0.34 -3.5 764,878 + PP_0657 0.44 +0.8 764,879 - PP_0657 0.44 -0.7 764,887 + PP_0657 0.45 -4.0 764,989 + PP_0657 0.57 -2.6 764,993 - PP_0657 0.57 -4.3 764,993 - PP_0657 0.57 -3.9 765,303 + -2.2 765,303 + -3.3 765,304 - -4.3 765,304 - +1.8 765,340 + +1.4 765,340 + +0.7 765,340 + -2.2 765,340 + -0.2 765,340 + -1.0 765,340 + -0.4 765,341 - +1.1 765,341 - +2.2 765,341 - -3.3 765,344 + +0.4 765,345 - +0.7 765,345 - -0.2 765,345 - -3.5 765,351 + -3.7 765,352 - -1.2 765,376 + -1.3 765,381 - +0.5 765,383 + -4.9 765,384 - +1.2 765,404 + +0.2 765,440 - -3.8 765,441 + +0.5 765,441 + +0.2 765,441 + -2.6 765,442 - -4.3 765,462 - +0.1 765,622 + PP_0658 0.23 +1.1 765,622 + PP_0658 0.23 -1.4 765,622 + PP_0658 0.23 +0.0 765,622 + PP_0658 0.23 -3.3 765,622 + PP_0658 0.23 +0.0 765,622 + PP_0658 0.23 +0.8 765,623 - PP_0658 0.23 -4.1 765,623 - PP_0658 0.23 +2.0 765,623 - PP_0658 0.23 -4.7 765,623 - PP_0658 0.23 -1.2 765,623 - PP_0658 0.23 +1.3 765,623 - PP_0658 0.23 +1.0 765,623 - PP_0658 0.23 -4.3 765,623 - PP_0658 0.23 -2.9 765,623 - PP_0658 0.23 -1.9 765,623 - PP_0658 0.23 -2.3 765,623 - PP_0658 0.23 +0.4 765,623 - PP_0658 0.23 -2.8 765,623 - PP_0658 0.23 +0.9 765,629 + PP_0658 0.24 -3.8 765,629 + PP_0658 0.24 +1.3 765,720 + PP_0658 0.34 -4.1 765,721 - PP_0658 0.34 -2.6 766,056 + PP_0658 0.69 -4.5 766,056 + PP_0658 0.69 -3.6 766,057 - PP_0658 0.70 +0.6 766,057 - PP_0658 0.70 -0.1 766,390 - +1.4 766,447 + -3.8 766,448 - +0.4 766,448 - +0.8 766,448 - -3.7 766,449 + +0.3 766,449 + -1.7 766,449 + +0.1 766,450 - -3.0 766,450 - +0.3 766,450 - +0.5 766,450 - +0.7 766,480 + -3.0 766,481 - -3.7 766,481 - -2.9 766,585 + -3.6 766,585 + +0.8 766,585 + -3.2 766,586 - -0.2 766,586 - +0.6 766,586 - -0.3 766,586 - +0.1 766,596 + +0.8 766,596 + +0.1 766,596 + +1.3 766,597 - -4.0 766,597 - -4.0 766,597 - -4.2 766,635 + -0.6 766,636 - -1.3 766,636 - +0.8 766,642 - PP_0659 0.10 +0.9 766,642 - PP_0659 0.10 -3.9 766,662 + PP_0659 0.12 -0.9 766,663 - PP_0659 0.12 +0.4 766,663 - PP_0659 0.12 -0.5 766,698 + PP_0659 0.15 -0.0 766,699 - PP_0659 0.15 +0.0 766,863 + PP_0659 0.28 -0.3 766,863 + PP_0659 0.28 -2.2 766,863 + PP_0659 0.28 -3.7 766,863 + PP_0659 0.28 -2.2 766,863 + PP_0659 0.28 -0.9 766,864 - PP_0659 0.28 -3.0 766,864 - PP_0659 0.28 +1.1 766,864 - PP_0659 0.28 -2.4 766,932 - PP_0659 0.33 -0.0 766,986 + PP_0659 0.38 +0.1 766,986 + PP_0659 0.38 +0.1 766,987 - PP_0659 0.38 +2.2 767,291 + PP_0659 0.61 -0.6 767,291 + PP_0659 0.61 -2.9
Or see this region's nucleotide sequence