Experiment: P. putida Sci small MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0642 and PP_0643 are separated by 31 nucleotides PP_0643 and PP_0645 are separated by 167 nucleotides PP_0645 and PP_0646 are separated by 250 nucleotides PP_0646 and PP_0647 overlap by 8 nucleotides PP_0647 and PP_0648 are separated by 191 nucleotides
PP_0642: PP_0642 - conserved membrane protein of unknown function, at 753,916 to 754,530
_0642
PP_0643: PP_0643 - protein of unknown function, at 754,562 to 754,744
_0643
PP_0645: PP_0645 - protein of unknown function, at 754,912 to 755,154
_0645
PP_0646: PP_0646 - conserved protein of unknown function, at 755,405 to 756,805
_0646
PP_0647: PP_0647 - conserved membrane protein of unknown function, at 756,798 to 757,187
_0647
PP_0648: PP_0648 - conserved protein of unknown function, at 757,379 to 757,834
_0648
Position (kb) 755
756
757 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 754.432 kb on + strand, within PP_0642 at 754.432 kb on + strand, within PP_0642 at 754.432 kb on + strand, within PP_0642 at 754.433 kb on - strand, within PP_0642 at 754.664 kb on + strand, within PP_0643 at 754.664 kb on + strand, within PP_0643 at 754.665 kb on - strand, within PP_0643 at 754.856 kb on + strand at 754.857 kb on - strand at 754.857 kb on - strand at 754.947 kb on + strand, within PP_0645 at 754.947 kb on + strand, within PP_0645 at 754.948 kb on - strand, within PP_0645 at 754.948 kb on - strand, within PP_0645 at 755.009 kb on + strand, within PP_0645 at 755.009 kb on + strand, within PP_0645 at 755.010 kb on - strand, within PP_0645 at 755.010 kb on - strand, within PP_0645 at 755.040 kb on + strand, within PP_0645 at 755.041 kb on - strand, within PP_0645 at 755.064 kb on + strand, within PP_0645 at 755.104 kb on + strand, within PP_0645 at 755.105 kb on - strand, within PP_0645 at 755.105 kb on - strand, within PP_0645 at 755.105 kb on - strand, within PP_0645 at 755.123 kb on + strand, within PP_0645 at 755.123 kb on + strand, within PP_0645 at 755.123 kb on + strand, within PP_0645 at 755.124 kb on - strand, within PP_0645 at 755.196 kb on + strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.197 kb on - strand at 755.201 kb on + strand at 755.201 kb on + strand at 755.232 kb on - strand at 755.266 kb on - strand at 755.266 kb on - strand at 755.281 kb on - strand at 755.281 kb on - strand at 755.291 kb on + strand at 755.291 kb on + strand at 755.292 kb on - strand at 755.297 kb on + strand at 755.298 kb on - strand at 755.298 kb on - strand at 755.298 kb on - strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.359 kb on + strand at 755.360 kb on - strand at 755.360 kb on - strand at 755.360 kb on - strand at 755.360 kb on - strand at 755.366 kb on + strand at 755.366 kb on + strand at 755.367 kb on - strand at 755.382 kb on + strand at 755.382 kb on + strand at 755.382 kb on + strand at 755.439 kb on + strand at 755.439 kb on + strand at 755.439 kb on + strand at 755.440 kb on - strand at 755.440 kb on - strand at 755.631 kb on + strand, within PP_0646 at 755.631 kb on + strand, within PP_0646 at 755.631 kb on + strand, within PP_0646 at 755.631 kb on + strand, within PP_0646 at 755.632 kb on - strand, within PP_0646 at 755.632 kb on - strand, within PP_0646 at 755.752 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.819 kb on + strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.820 kb on - strand, within PP_0646 at 755.912 kb on - strand, within PP_0646 at 755.979 kb on - strand, within PP_0646 at 755.979 kb on - strand, within PP_0646 at 756.046 kb on - strand at 756.081 kb on - strand, within PP_0646 at 756.081 kb on - strand, within PP_0646 at 756.107 kb on - strand, within PP_0646 at 756.107 kb on - strand, within PP_0646 at 756.107 kb on - strand, within PP_0646 at 756.137 kb on - strand, within PP_0646 at 756.235 kb on + strand, within PP_0646 at 756.235 kb on + strand, within PP_0646 at 756.235 kb on + strand, within PP_0646 at 756.236 kb on - strand, within PP_0646 at 756.236 kb on - strand, within PP_0646 at 756.279 kb on + strand, within PP_0646 at 756.279 kb on + strand, within PP_0646 at 756.280 kb on - strand, within PP_0646 at 756.280 kb on - strand, within PP_0646 at 756.310 kb on + strand, within PP_0646 at 756.311 kb on - strand, within PP_0646 at 756.311 kb on - strand, within PP_0646 at 756.311 kb on - strand, within PP_0646 at 756.311 kb on - strand, within PP_0646 at 756.333 kb on - strand, within PP_0646 at 756.358 kb on + strand, within PP_0646 at 756.431 kb on + strand, within PP_0646 at 756.431 kb on + strand, within PP_0646 at 756.431 kb on + strand, within PP_0646 at 756.431 kb on + strand, within PP_0646 at 756.432 kb on - strand, within PP_0646 at 756.432 kb on - strand, within PP_0646 at 756.432 kb on - strand, within PP_0646 at 756.432 kb on - strand, within PP_0646 at 756.432 kb on - strand, within PP_0646 at 756.454 kb on + strand, within PP_0646 at 756.455 kb on - strand, within PP_0646 at 756.457 kb on + strand, within PP_0646 at 756.457 kb on + strand, within PP_0646 at 756.457 kb on + strand, within PP_0646 at 756.457 kb on + strand, within PP_0646 at 756.458 kb on - strand, within PP_0646 at 756.458 kb on - strand, within PP_0646 at 756.458 kb on - strand, within PP_0646 at 756.458 kb on - strand, within PP_0646 at 756.458 kb on - strand, within PP_0646 at 756.458 kb on - strand, within PP_0646 at 756.461 kb on + strand, within PP_0646 at 756.461 kb on + strand, within PP_0646 at 756.462 kb on - strand, within PP_0646 at 756.462 kb on - strand, within PP_0646 at 756.495 kb on + strand, within PP_0646 at 756.502 kb on + strand, within PP_0646 at 756.502 kb on + strand, within PP_0646 at 756.502 kb on + strand, within PP_0646 at 756.502 kb on + strand, within PP_0646 at 756.503 kb on - strand, within PP_0646 at 756.503 kb on - strand, within PP_0646 at 756.503 kb on - strand, within PP_0646 at 756.512 kb on + strand, within PP_0646 at 756.512 kb on + strand, within PP_0646 at 756.654 kb on + strand, within PP_0646 at 756.654 kb on + strand, within PP_0646 at 756.654 kb on + strand, within PP_0646 at 756.654 kb on + strand, within PP_0646 at 756.655 kb on - strand, within PP_0646 at 756.655 kb on - strand, within PP_0646 at 756.655 kb on - strand, within PP_0646 at 756.655 kb on - strand, within PP_0646 at 756.655 kb on - strand, within PP_0646 at 756.677 kb on - strand at 756.699 kb on + strand at 756.699 kb on + strand at 756.700 kb on - strand at 756.700 kb on - strand at 756.785 kb on + strand at 756.785 kb on + strand at 756.785 kb on + strand at 756.786 kb on - strand at 756.797 kb on + strand at 756.797 kb on + strand at 756.797 kb on + strand at 757.027 kb on + strand, within PP_0647 at 757.045 kb on + strand, within PP_0647 at 757.045 kb on + strand, within PP_0647 at 757.045 kb on + strand, within PP_0647 at 757.045 kb on + strand, within PP_0647 at 757.045 kb on + strand, within PP_0647 at 757.045 kb on + strand, within PP_0647 at 757.045 kb on + strand, within PP_0647 at 757.045 kb on + strand, within PP_0647 at 757.046 kb on - strand, within PP_0647 at 757.046 kb on - strand, within PP_0647 at 757.049 kb on + strand, within PP_0647 at 757.049 kb on + strand, within PP_0647 at 757.049 kb on + strand, within PP_0647 at 757.050 kb on - strand, within PP_0647 at 757.050 kb on - strand, within PP_0647 at 757.050 kb on - strand, within PP_0647 at 757.050 kb on - strand, within PP_0647 at 757.114 kb on + strand, within PP_0647 at 757.120 kb on + strand, within PP_0647 at 757.121 kb on - strand, within PP_0647 at 757.167 kb on + strand at 757.167 kb on + strand at 757.167 kb on + strand at 757.167 kb on + strand at 757.167 kb on + strand at 757.167 kb on + strand at 757.168 kb on - strand at 757.168 kb on - strand at 757.168 kb on - strand at 757.168 kb on - strand at 757.172 kb on - strand at 757.172 kb on - strand at 757.172 kb on - strand at 757.209 kb on + strand at 757.209 kb on + strand at 757.209 kb on + strand at 757.210 kb on - strand at 757.210 kb on - strand at 757.261 kb on - strand at 757.261 kb on - strand at 757.301 kb on - strand at 757.301 kb on - strand at 757.301 kb on - strand at 757.311 kb on + strand at 757.316 kb on + strand at 757.317 kb on - strand at 757.320 kb on + strand at 757.320 kb on + strand at 757.321 kb on - strand at 757.379 kb on - strand at 757.412 kb on + strand at 757.440 kb on + strand, within PP_0648 at 757.539 kb on + strand, within PP_0648 at 757.540 kb on - strand, within PP_0648 at 757.594 kb on + strand, within PP_0648 at 757.595 kb on - strand, within PP_0648 at 757.606 kb on + strand, within PP_0648 at 757.606 kb on + strand, within PP_0648 at 757.607 kb on - strand, within PP_0648 at 757.607 kb on - strand, within PP_0648 at 757.607 kb on - strand, within PP_0648 at 757.607 kb on - strand, within PP_0648 at 757.614 kb on - strand, within PP_0648 at 757.614 kb on - strand, within PP_0648 at 757.614 kb on - strand, within PP_0648 at 757.633 kb on + strand, within PP_0648 at 757.634 kb on - strand, within PP_0648 at 757.637 kb on + strand, within PP_0648 at 757.637 kb on + strand, within PP_0648 at 757.637 kb on + strand, within PP_0648 at 757.637 kb on + strand, within PP_0648 at 757.637 kb on + strand, within PP_0648 at 757.637 kb on + strand, within PP_0648 at 757.637 kb on + strand, within PP_0648 at 757.638 kb on - strand, within PP_0648 at 757.638 kb on - strand, within PP_0648 at 757.638 kb on - strand, within PP_0648 at 757.638 kb on - strand, within PP_0648 at 757.638 kb on - strand, within PP_0648 at 757.638 kb on - strand, within PP_0648 at 757.638 kb on - strand, within PP_0648 at 757.638 kb on - strand, within PP_0648 at 757.638 kb on - strand, within PP_0648 at 757.639 kb on + strand, within PP_0648 at 757.639 kb on + strand, within PP_0648 at 757.640 kb on - strand, within PP_0648 at 757.640 kb on - strand, within PP_0648 at 757.641 kb on - strand, within PP_0648 at 757.673 kb on + strand, within PP_0648 at 757.674 kb on - strand, within PP_0648 at 757.674 kb on - strand, within PP_0648 at 757.693 kb on + strand, within PP_0648 at 757.756 kb on + strand, within PP_0648 at 757.756 kb on + strand, within PP_0648 at 757.757 kb on - strand, within PP_0648 at 757.757 kb on - strand, within PP_0648 at 757.767 kb on + strand, within PP_0648 at 757.767 kb on + strand, within PP_0648 at 757.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1 remove 754,432 + PP_0642 0.84 +1.5 754,432 + PP_0642 0.84 +0.1 754,432 + PP_0642 0.84 -3.9 754,433 - PP_0642 0.84 +0.2 754,664 + PP_0643 0.56 -0.9 754,664 + PP_0643 0.56 +0.2 754,665 - PP_0643 0.56 +0.8 754,856 + -0.4 754,857 - +0.4 754,857 - -4.0 754,947 + PP_0645 0.14 -1.4 754,947 + PP_0645 0.14 +0.5 754,948 - PP_0645 0.15 -1.6 754,948 - PP_0645 0.15 -1.9 755,009 + PP_0645 0.40 +0.4 755,009 + PP_0645 0.40 -1.4 755,010 - PP_0645 0.40 -0.2 755,010 - PP_0645 0.40 +1.6 755,040 + PP_0645 0.53 +0.6 755,041 - PP_0645 0.53 -3.4 755,064 + PP_0645 0.63 +1.0 755,104 + PP_0645 0.79 -1.6 755,105 - PP_0645 0.79 +1.1 755,105 - PP_0645 0.79 +1.0 755,105 - PP_0645 0.79 +0.8 755,123 + PP_0645 0.87 -0.1 755,123 + PP_0645 0.87 +0.2 755,123 + PP_0645 0.87 +1.7 755,124 - PP_0645 0.87 -0.5 755,196 + -0.6 755,197 - +1.7 755,197 - +1.7 755,197 - -2.1 755,197 - +0.2 755,197 - +0.4 755,197 - +0.2 755,201 + +1.1 755,201 + -0.8 755,232 - -0.1 755,266 - -3.8 755,266 - +0.6 755,281 - +2.0 755,281 - +0.2 755,291 + -4.0 755,291 + -0.1 755,292 - -3.9 755,297 + +0.4 755,298 - +0.5 755,298 - +0.3 755,298 - -1.2 755,359 + -0.8 755,359 + -0.2 755,359 + +1.0 755,359 + +1.4 755,359 + +1.8 755,359 + -0.1 755,360 - +1.5 755,360 - +0.4 755,360 - -0.9 755,360 - +2.7 755,366 + +0.8 755,366 + -0.2 755,367 - +2.0 755,382 + +0.3 755,382 + +0.9 755,382 + -2.6 755,439 + +1.5 755,439 + +1.0 755,439 + -1.2 755,440 - +0.9 755,440 - -1.7 755,631 + PP_0646 0.16 -2.4 755,631 + PP_0646 0.16 +0.3 755,631 + PP_0646 0.16 +0.8 755,631 + PP_0646 0.16 +1.3 755,632 - PP_0646 0.16 +2.0 755,632 - PP_0646 0.16 +0.8 755,752 + PP_0646 0.25 -1.9 755,819 + PP_0646 0.30 +1.0 755,819 + PP_0646 0.30 -4.6 755,819 + PP_0646 0.30 +0.1 755,819 + PP_0646 0.30 +0.6 755,819 + PP_0646 0.30 +2.3 755,820 - PP_0646 0.30 +1.1 755,820 - PP_0646 0.30 -0.0 755,820 - PP_0646 0.30 +0.9 755,820 - PP_0646 0.30 +0.0 755,820 - PP_0646 0.30 +0.7 755,912 - PP_0646 0.36 +0.6 755,979 - PP_0646 0.41 -4.8 755,979 - PP_0646 0.41 +1.4 756,046 - +1.0 756,081 - PP_0646 0.48 -4.4 756,081 - PP_0646 0.48 -3.6 756,107 - PP_0646 0.50 -4.3 756,107 - PP_0646 0.50 -2.2 756,107 - PP_0646 0.50 +1.9 756,137 - PP_0646 0.52 +1.9 756,235 + PP_0646 0.59 +1.9 756,235 + PP_0646 0.59 +0.4 756,235 + PP_0646 0.59 +0.7 756,236 - PP_0646 0.59 -0.3 756,236 - PP_0646 0.59 +0.5 756,279 + PP_0646 0.62 +0.6 756,279 + PP_0646 0.62 +1.1 756,280 - PP_0646 0.62 -3.4 756,280 - PP_0646 0.62 +1.2 756,310 + PP_0646 0.65 +1.2 756,311 - PP_0646 0.65 -1.7 756,311 - PP_0646 0.65 -1.1 756,311 - PP_0646 0.65 -3.2 756,311 - PP_0646 0.65 +0.2 756,333 - PP_0646 0.66 +0.3 756,358 + PP_0646 0.68 +0.3 756,431 + PP_0646 0.73 +1.5 756,431 + PP_0646 0.73 -0.6 756,431 + PP_0646 0.73 -0.0 756,431 + PP_0646 0.73 +2.1 756,432 - PP_0646 0.73 -0.5 756,432 - PP_0646 0.73 +0.8 756,432 - PP_0646 0.73 +1.6 756,432 - PP_0646 0.73 -1.3 756,432 - PP_0646 0.73 +0.3 756,454 + PP_0646 0.75 +0.3 756,455 - PP_0646 0.75 +1.4 756,457 + PP_0646 0.75 -0.2 756,457 + PP_0646 0.75 -1.1 756,457 + PP_0646 0.75 +0.9 756,457 + PP_0646 0.75 +0.8 756,458 - PP_0646 0.75 +0.9 756,458 - PP_0646 0.75 +1.5 756,458 - PP_0646 0.75 +0.2 756,458 - PP_0646 0.75 +2.3 756,458 - PP_0646 0.75 -2.4 756,458 - PP_0646 0.75 +0.7 756,461 + PP_0646 0.75 +2.3 756,461 + PP_0646 0.75 -3.3 756,462 - PP_0646 0.75 +1.4 756,462 - PP_0646 0.75 -3.4 756,495 + PP_0646 0.78 -3.1 756,502 + PP_0646 0.78 +1.4 756,502 + PP_0646 0.78 +0.1 756,502 + PP_0646 0.78 -3.5 756,502 + PP_0646 0.78 +0.4 756,503 - PP_0646 0.78 +2.5 756,503 - PP_0646 0.78 +0.1 756,503 - PP_0646 0.78 +2.2 756,512 + PP_0646 0.79 +1.7 756,512 + PP_0646 0.79 +0.7 756,654 + PP_0646 0.89 +0.7 756,654 + PP_0646 0.89 -4.9 756,654 + PP_0646 0.89 +2.3 756,654 + PP_0646 0.89 +0.1 756,655 - PP_0646 0.89 +0.7 756,655 - PP_0646 0.89 +2.0 756,655 - PP_0646 0.89 +1.3 756,655 - PP_0646 0.89 -3.2 756,655 - PP_0646 0.89 -1.0 756,677 - -1.2 756,699 + +0.7 756,699 + -3.1 756,700 - -0.6 756,700 - -3.8 756,785 + +2.2 756,785 + -0.1 756,785 + -3.8 756,786 - +1.3 756,797 + +0.3 756,797 + -3.8 756,797 + -1.8 757,027 + PP_0647 0.59 -0.3 757,045 + PP_0647 0.63 +0.8 757,045 + PP_0647 0.63 -0.8 757,045 + PP_0647 0.63 -0.2 757,045 + PP_0647 0.63 -3.4 757,045 + PP_0647 0.63 -0.0 757,045 + PP_0647 0.63 +0.7 757,045 + PP_0647 0.63 +1.5 757,045 + PP_0647 0.63 +0.4 757,046 - PP_0647 0.64 -0.0 757,046 - PP_0647 0.64 +1.4 757,049 + PP_0647 0.64 +0.2 757,049 + PP_0647 0.64 +1.4 757,049 + PP_0647 0.64 +1.5 757,050 - PP_0647 0.65 +1.0 757,050 - PP_0647 0.65 -0.8 757,050 - PP_0647 0.65 -2.4 757,050 - PP_0647 0.65 -3.7 757,114 + PP_0647 0.81 +0.1 757,120 + PP_0647 0.83 -0.3 757,121 - PP_0647 0.83 +2.0 757,167 + +1.0 757,167 + -4.2 757,167 + -0.8 757,167 + +0.0 757,167 + +1.7 757,167 + -3.6 757,168 - +0.4 757,168 - -3.2 757,168 - -3.7 757,168 - +1.5 757,172 - +2.2 757,172 - +0.5 757,172 - -3.6 757,209 + +0.4 757,209 + +2.0 757,209 + +0.1 757,210 - +1.5 757,210 - -3.9 757,261 - +0.3 757,261 - -3.9 757,301 - +0.5 757,301 - -0.2 757,301 - +1.2 757,311 + +0.3 757,316 + +1.4 757,317 - +0.0 757,320 + +1.4 757,320 + +0.9 757,321 - +2.3 757,379 - +1.4 757,412 + -4.1 757,440 + PP_0648 0.13 +1.0 757,539 + PP_0648 0.35 -4.2 757,540 - PP_0648 0.35 +0.8 757,594 + PP_0648 0.47 -2.4 757,595 - PP_0648 0.47 -3.1 757,606 + PP_0648 0.50 +0.4 757,606 + PP_0648 0.50 -1.3 757,607 - PP_0648 0.50 -4.3 757,607 - PP_0648 0.50 -4.0 757,607 - PP_0648 0.50 +1.3 757,607 - PP_0648 0.50 +0.9 757,614 - PP_0648 0.52 +0.6 757,614 - PP_0648 0.52 +0.6 757,614 - PP_0648 0.52 +1.2 757,633 + PP_0648 0.56 +0.7 757,634 - PP_0648 0.56 -0.3 757,637 + PP_0648 0.57 +1.2 757,637 + PP_0648 0.57 +1.1 757,637 + PP_0648 0.57 -1.2 757,637 + PP_0648 0.57 +0.1 757,637 + PP_0648 0.57 -3.5 757,637 + PP_0648 0.57 +1.7 757,637 + PP_0648 0.57 -2.4 757,638 - PP_0648 0.57 -2.8 757,638 - PP_0648 0.57 +1.2 757,638 - PP_0648 0.57 +2.3 757,638 - PP_0648 0.57 +1.2 757,638 - PP_0648 0.57 +1.0 757,638 - PP_0648 0.57 -2.2 757,638 - PP_0648 0.57 +1.4 757,638 - PP_0648 0.57 +0.9 757,638 - PP_0648 0.57 +1.3 757,639 + PP_0648 0.57 +1.5 757,639 + PP_0648 0.57 +0.8 757,640 - PP_0648 0.57 -0.3 757,640 - PP_0648 0.57 -0.3 757,641 - PP_0648 0.57 -3.4 757,673 + PP_0648 0.64 +1.4 757,674 - PP_0648 0.65 +1.3 757,674 - PP_0648 0.65 -0.2 757,693 + PP_0648 0.69 +1.6 757,756 + PP_0648 0.83 +2.4 757,756 + PP_0648 0.83 -1.8 757,757 - PP_0648 0.83 +1.5 757,757 - PP_0648 0.83 -4.6 757,767 + PP_0648 0.85 -3.3 757,767 + PP_0648 0.85 +1.0 757,803 - -0.1
Or see this region's nucleotide sequence