Experiment: P. putida Sci small MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0168 and PP_5431 are separated by 127 nucleotides PP_5431 and PP_0169 are separated by 198 nucleotides PP_0169 and PP_0170 are separated by 17 nucleotides
PP_0168: PP_0168 - putative surface adhesion protein, at 194,495 to 220,543
_0168
PP_5431: PP_5431 - conserved protein of unknown function, at 220,671 to 221,030
_5431
PP_0169: PP_0169 - Dioxygenase, TauD/TfdA family, at 221,229 to 222,128
_0169
PP_0170: PP_0170 - ABC transporter, periplasmic binding protein, at 222,146 to 223,165
_0170
Position (kb) 221
222
223 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 220.298 kb on - strand at 220.349 kb on + strand at 220.349 kb on + strand at 220.474 kb on + strand at 220.475 kb on - strand at 220.602 kb on + strand at 220.603 kb on - strand at 220.603 kb on - strand at 220.642 kb on - strand at 220.654 kb on - strand at 220.654 kb on - strand at 220.695 kb on + strand at 220.696 kb on - strand at 220.696 kb on - strand at 221.090 kb on - strand at 221.327 kb on - strand, within PP_0169 at 221.327 kb on - strand, within PP_0169 at 221.372 kb on + strand, within PP_0169 at 221.423 kb on + strand, within PP_0169 at 221.423 kb on + strand, within PP_0169 at 221.423 kb on + strand, within PP_0169 at 221.424 kb on - strand, within PP_0169 at 221.470 kb on + strand, within PP_0169 at 221.470 kb on + strand, within PP_0169 at 221.471 kb on - strand, within PP_0169 at 221.471 kb on - strand, within PP_0169 at 221.602 kb on - strand, within PP_0169 at 221.602 kb on - strand, within PP_0169 at 221.687 kb on + strand, within PP_0169 at 221.687 kb on + strand, within PP_0169 at 221.688 kb on + strand, within PP_0169 at 221.688 kb on - strand, within PP_0169 at 221.688 kb on - strand, within PP_0169 at 221.688 kb on - strand, within PP_0169 at 221.704 kb on + strand, within PP_0169 at 221.754 kb on + strand, within PP_0169 at 221.755 kb on - strand, within PP_0169 at 221.755 kb on - strand, within PP_0169 at 221.757 kb on - strand, within PP_0169 at 221.964 kb on + strand, within PP_0169 at 221.964 kb on + strand, within PP_0169 at 221.965 kb on - strand, within PP_0169 at 221.965 kb on - strand, within PP_0169 at 221.965 kb on - strand, within PP_0169 at 221.994 kb on + strand, within PP_0169 at 221.995 kb on - strand, within PP_0169 at 222.016 kb on - strand, within PP_0169 at 222.016 kb on - strand, within PP_0169 at 222.093 kb on + strand at 222.253 kb on + strand, within PP_0170 at 222.253 kb on + strand, within PP_0170 at 222.515 kb on + strand, within PP_0170 at 222.518 kb on + strand, within PP_0170 at 222.518 kb on + strand, within PP_0170 at 222.518 kb on + strand, within PP_0170 at 222.518 kb on + strand, within PP_0170 at 222.519 kb on - strand, within PP_0170 at 222.578 kb on - strand, within PP_0170 at 222.578 kb on - strand, within PP_0170 at 222.627 kb on - strand, within PP_0170 at 222.627 kb on - strand, within PP_0170 at 222.659 kb on + strand, within PP_0170 at 222.660 kb on - strand, within PP_0170 at 222.660 kb on - strand, within PP_0170 at 222.677 kb on + strand, within PP_0170 at 222.677 kb on + strand, within PP_0170 at 222.677 kb on + strand, within PP_0170 at 222.677 kb on + strand, within PP_0170 at 222.677 kb on + strand, within PP_0170 at 222.678 kb on - strand, within PP_0170 at 222.678 kb on - strand, within PP_0170 at 222.678 kb on - strand, within PP_0170 at 222.816 kb on - strand, within PP_0170 at 222.822 kb on + strand, within PP_0170 at 222.856 kb on + strand, within PP_0170 at 222.890 kb on + strand, within PP_0170 at 222.890 kb on + strand, within PP_0170 at 222.965 kb on + strand, within PP_0170 at 222.965 kb on + strand, within PP_0170 at 222.966 kb on - strand, within PP_0170 at 222.966 kb on - strand, within PP_0170 at 222.966 kb on - strand, within PP_0170 at 222.966 kb on - strand, within PP_0170 at 222.966 kb on - strand, within PP_0170 at 222.966 kb on - strand, within PP_0170 at 222.966 kb on - strand, within PP_0170 at 222.966 kb on - strand, within PP_0170 at 222.966 kb on - strand, within PP_0170 at 223.031 kb on + strand, within PP_0170 at 223.046 kb on - strand, within PP_0170 at 223.061 kb on + strand, within PP_0170 at 223.062 kb on - strand, within PP_0170 at 223.062 kb on - strand, within PP_0170 at 223.127 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1 remove 220,298 - +0.0 220,349 + -0.3 220,349 + +0.5 220,474 + +0.7 220,475 - +0.7 220,602 + +1.5 220,603 - +0.1 220,603 - -2.8 220,642 - +0.6 220,654 - +1.8 220,654 - +1.7 220,695 + +0.8 220,696 - -2.0 220,696 - +1.1 221,090 - -2.9 221,327 - PP_0169 0.11 -4.4 221,327 - PP_0169 0.11 -2.9 221,372 + PP_0169 0.16 +1.9 221,423 + PP_0169 0.22 -3.4 221,423 + PP_0169 0.22 +2.4 221,423 + PP_0169 0.22 +2.7 221,424 - PP_0169 0.22 +0.4 221,470 + PP_0169 0.27 +1.3 221,470 + PP_0169 0.27 +1.7 221,471 - PP_0169 0.27 +2.1 221,471 - PP_0169 0.27 -1.6 221,602 - PP_0169 0.41 +1.2 221,602 - PP_0169 0.41 +0.4 221,687 + PP_0169 0.51 +0.9 221,687 + PP_0169 0.51 +0.6 221,688 + PP_0169 0.51 -3.7 221,688 - PP_0169 0.51 +1.6 221,688 - PP_0169 0.51 -4.1 221,688 - PP_0169 0.51 +0.6 221,704 + PP_0169 0.53 +1.0 221,754 + PP_0169 0.58 +1.3 221,755 - PP_0169 0.58 +2.6 221,755 - PP_0169 0.58 -3.8 221,757 - PP_0169 0.59 +1.7 221,964 + PP_0169 0.82 -3.8 221,964 + PP_0169 0.82 -3.4 221,965 - PP_0169 0.82 +0.0 221,965 - PP_0169 0.82 +2.5 221,965 - PP_0169 0.82 +2.4 221,994 + PP_0169 0.85 +2.5 221,995 - PP_0169 0.85 +2.1 222,016 - PP_0169 0.87 +1.5 222,016 - PP_0169 0.87 +1.2 222,093 + +0.3 222,253 + PP_0170 0.10 -2.0 222,253 + PP_0170 0.10 +1.1 222,515 + PP_0170 0.36 -0.4 222,518 + PP_0170 0.36 +0.5 222,518 + PP_0170 0.36 +1.0 222,518 + PP_0170 0.36 +0.7 222,518 + PP_0170 0.36 -3.6 222,519 - PP_0170 0.37 -2.7 222,578 - PP_0170 0.42 -1.3 222,578 - PP_0170 0.42 +1.9 222,627 - PP_0170 0.47 -3.5 222,627 - PP_0170 0.47 +4.2 222,659 + PP_0170 0.50 +1.1 222,660 - PP_0170 0.50 +4.2 222,660 - PP_0170 0.50 -0.2 222,677 + PP_0170 0.52 -0.8 222,677 + PP_0170 0.52 +0.7 222,677 + PP_0170 0.52 -3.7 222,677 + PP_0170 0.52 -3.0 222,677 + PP_0170 0.52 -2.0 222,678 - PP_0170 0.52 +4.9 222,678 - PP_0170 0.52 -4.1 222,678 - PP_0170 0.52 +1.0 222,816 - PP_0170 0.66 -0.3 222,822 + PP_0170 0.66 +2.8 222,856 + PP_0170 0.70 +2.2 222,890 + PP_0170 0.73 +1.1 222,890 + PP_0170 0.73 +0.7 222,965 + PP_0170 0.80 +1.6 222,965 + PP_0170 0.80 +1.9 222,966 - PP_0170 0.80 -3.7 222,966 - PP_0170 0.80 -2.9 222,966 - PP_0170 0.80 +1.7 222,966 - PP_0170 0.80 +0.5 222,966 - PP_0170 0.80 -0.7 222,966 - PP_0170 0.80 -0.9 222,966 - PP_0170 0.80 +1.3 222,966 - PP_0170 0.80 -2.4 222,966 - PP_0170 0.80 +0.1 223,031 + PP_0170 0.87 +1.0 223,046 - PP_0170 0.88 +1.6 223,061 + PP_0170 0.90 +1.5 223,062 - PP_0170 0.90 -2.4 223,062 - PP_0170 0.90 +2.4 223,127 + -0.7
Or see this region's nucleotide sequence