Strain Fitness in Pseudomonas putida KT2440 around PP_0095

Experiment: P. putida Sci small MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0093 and PP_0094 are separated by 106 nucleotidesPP_0094 and PP_0095 are separated by 121 nucleotidesPP_0095 and PP_0096 are separated by 102 nucleotides PP_0093: PP_0093 - putative zinc protease protein, at 98,575 to 99,651 _0093 PP_0094: PP_0094 - 5'-nucleotidase, at 99,758 to 100,408 _0094 PP_0095: PP_0095 - putative enzyme of unknown function, at 100,530 to 101,078 _0095 PP_0096: PP_0096 - oligopeptidase A, at 101,181 to 103,232 _0096 Position (kb) 100 101 102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 99.571 kb on + strandat 99.709 kb on + strandat 99.709 kb on + strandat 99.709 kb on + strandat 99.769 kb on + strandat 99.769 kb on + strandat 99.769 kb on + strandat 99.770 kb on - strandat 100.014 kb on + strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.015 kb on - strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.095 kb on + strand, within PP_0094at 100.096 kb on - strandat 100.096 kb on - strand, within PP_0094at 100.096 kb on - strand, within PP_0094at 100.096 kb on - strandat 100.237 kb on - strand, within PP_0094at 100.410 kb on + strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.411 kb on - strandat 100.469 kb on + strandat 100.469 kb on + strandat 100.470 kb on - strandat 100.546 kb on + strandat 100.582 kb on + strandat 100.582 kb on + strandat 100.582 kb on + strandat 100.583 kb on - strandat 100.583 kb on - strandat 100.597 kb on + strand, within PP_0095at 100.598 kb on - strand, within PP_0095at 100.660 kb on + strand, within PP_0095at 100.660 kb on + strand, within PP_0095at 100.660 kb on + strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.661 kb on - strand, within PP_0095at 100.667 kb on - strand, within PP_0095at 100.719 kb on + strand, within PP_0095at 100.719 kb on + strand, within PP_0095at 100.720 kb on - strand, within PP_0095at 100.720 kb on - strand, within PP_0095at 100.764 kb on - strand, within PP_0095at 100.881 kb on - strand, within PP_0095at 101.081 kb on + strandat 101.082 kb on - strandat 101.082 kb on - strandat 101.082 kb on - strandat 101.138 kb on - strandat 101.138 kb on - strandat 101.141 kb on + strandat 101.141 kb on + strandat 101.141 kb on + strandat 101.141 kb on + strandat 101.289 kb on - strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.330 kb on + strandat 101.331 kb on - strandat 101.331 kb on - strandat 101.331 kb on - strandat 101.331 kb on - strandat 101.445 kb on + strand, within PP_0096at 101.445 kb on + strand, within PP_0096at 101.445 kb on + strand, within PP_0096at 101.445 kb on + strand, within PP_0096at 101.445 kb on + strand, within PP_0096at 101.446 kb on - strand, within PP_0096at 101.475 kb on + strand, within PP_0096at 101.476 kb on - strand, within PP_0096at 101.476 kb on - strand, within PP_0096at 101.517 kb on + strand, within PP_0096at 101.518 kb on - strand, within PP_0096at 101.518 kb on - strand, within PP_0096at 101.574 kb on - strand, within PP_0096at 101.844 kb on + strand, within PP_0096at 101.844 kb on + strand, within PP_0096at 101.845 kb on - strand, within PP_0096at 101.845 kb on - strand, within PP_0096at 101.862 kb on + strand, within PP_0096at 101.863 kb on - strand, within PP_0096at 101.893 kb on + strand, within PP_0096at 101.893 kb on + strand, within PP_0096at 101.894 kb on - strand, within PP_0096at 101.894 kb on - strand, within PP_0096at 101.894 kb on - strand, within PP_0096at 101.894 kb on - strand, within PP_0096at 101.895 kb on + strand, within PP_0096at 101.895 kb on + strand, within PP_0096at 101.896 kb on - strand, within PP_0096

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida Sci small MOI 0.1
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99,571 + +1.1
99,709 + -4.0
99,709 + -4.7
99,709 + -3.4
99,769 + -1.8
99,769 + +0.3
99,769 + -0.1
99,770 - -0.7
100,014 + PP_0094 0.39 +0.8
100,015 - PP_0094 0.39 +0.0
100,015 - PP_0094 0.39 -0.1
100,015 - PP_0094 0.39 -0.1
100,015 - PP_0094 0.39 +0.7
100,015 - PP_0094 0.39 +0.9
100,095 + PP_0094 0.52 -2.7
100,095 + PP_0094 0.52 -2.7
100,095 + PP_0094 0.52 +0.9
100,096 - +2.8
100,096 - PP_0094 0.52 -0.9
100,096 - PP_0094 0.52 +1.6
100,096 - +0.5
100,237 - PP_0094 0.74 -1.5
100,410 + +1.3
100,411 - -4.6
100,411 - +0.7
100,411 - -3.1
100,411 - +0.5
100,411 - +1.2
100,411 - +1.0
100,469 + +1.6
100,469 + -4.7
100,470 - -0.5
100,546 + -4.6
100,582 + +0.1
100,582 + -0.5
100,582 + -1.2
100,583 - -1.4
100,583 - -1.6
100,597 + PP_0095 0.12 -0.5
100,598 - PP_0095 0.12 -0.3
100,660 + PP_0095 0.24 -1.0
100,660 + PP_0095 0.24 +0.3
100,660 + PP_0095 0.24 +0.2
100,661 - PP_0095 0.24 -0.6
100,661 - PP_0095 0.24 +0.6
100,661 - PP_0095 0.24 -3.0
100,661 - PP_0095 0.24 -0.3
100,661 - PP_0095 0.24 -2.3
100,661 - PP_0095 0.24 -1.7
100,667 - PP_0095 0.25 +0.4
100,719 + PP_0095 0.34 -1.8
100,719 + PP_0095 0.34 +0.7
100,720 - PP_0095 0.35 -0.4
100,720 - PP_0095 0.35 -0.3
100,764 - PP_0095 0.43 +2.6
100,881 - PP_0095 0.64 -0.6
101,081 + +0.3
101,082 - +0.6
101,082 - -3.8
101,082 - +0.5
101,138 - +0.3
101,138 - +0.3
101,141 + +0.0
101,141 + -4.2
101,141 + +1.5
101,141 + +0.9
101,289 - -3.3
101,330 + -2.8
101,330 + -0.8
101,330 + -3.2
101,330 + -0.1
101,330 + +0.7
101,331 - -3.8
101,331 - +0.6
101,331 - -3.1
101,331 - +1.5
101,445 + PP_0096 0.13 -4.1
101,445 + PP_0096 0.13 +0.9
101,445 + PP_0096 0.13 +1.2
101,445 + PP_0096 0.13 +0.9
101,445 + PP_0096 0.13 +0.9
101,446 - PP_0096 0.13 -4.1
101,475 + PP_0096 0.14 +1.9
101,476 - PP_0096 0.14 -4.0
101,476 - PP_0096 0.14 +0.2
101,517 + PP_0096 0.16 -4.7
101,518 - PP_0096 0.16 +0.6
101,518 - PP_0096 0.16 -3.0
101,574 - PP_0096 0.19 -4.0
101,844 + PP_0096 0.32 +0.0
101,844 + PP_0096 0.32 +0.9
101,845 - PP_0096 0.32 -0.0
101,845 - PP_0096 0.32 -3.5
101,862 + PP_0096 0.33 -2.1
101,863 - PP_0096 0.33 -0.5
101,893 + PP_0096 0.35 -0.1
101,893 + PP_0096 0.35 -0.2
101,894 - PP_0096 0.35 -0.9
101,894 - PP_0096 0.35 -0.5
101,894 - PP_0096 0.35 -2.3
101,894 - PP_0096 0.35 +0.9
101,895 + PP_0096 0.35 +1.1
101,895 + PP_0096 0.35 +1.3
101,896 - PP_0096 0.35 -1.2

Or see this region's nucleotide sequence