Strain Fitness in Escherichia coli BW25113 around b1172

Experiment: LB + carbenicillin Time4hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + carbenicillin Time4hr
1,220,907	+	ycgH	b4491	0.79	+0.4
1,220,907	+	ycgH	b4491	0.79	-0.1
1,220,922	-	ycgH	b4491	0.79	+0.1
1,220,932	-	ycgH	b4491	0.80	-0.0
1,220,932	-	ycgH	b4491	0.80	-0.3
1,221,029	-	ycgH	b4491	0.83	+0.4
1,221,103	-	ycgH	b4491	0.86	+0.3
1,221,128	+	ycgH	b4491	0.87	+0.2
1,221,137	+	ycgH	b4491	0.87	+0.3
1,221,137	+	ycgH	b4491	0.87	-0.5
1,221,271	+				+0.1
1,221,306	+				-0.1
1,221,396	+				-0.0
1,221,396	+				-0.2
1,221,424	-				+1.0
1,221,429	+				+0.4
1,221,429	+				-0.0
1,221,440	+				+0.1
1,221,440	+				+0.0
1,221,517	-				-0.3
1,221,549	-				+0.4
1,221,551	+				-1.0
1,221,552	+				+1.7
1,221,553	+				+1.0
1,221,553	-				+0.3
1,221,635	+	b1171	b1171	0.32	-1.2
1,221,815	-	b1171	b1171	0.87	-0.2
1,221,815	-	b1171	b1171	0.87	-0.6
1,221,892	-				+0.4
1,221,934	-	ymgG	b1172	0.19	-0.0
1,221,940	+	ymgG	b1172	0.21	+0.4
1,222,035	+	ymgG	b1172	0.49	+0.9
1,222,052	+	ymgG	b1172	0.54	+1.0
1,222,060	-	ymgG	b1172	0.56	+0.1
1,222,060	-	ymgG	b1172	0.56	+0.3
1,222,135	-	ymgG	b1172	0.78	+0.1
1,222,137	+	ymgG	b1172	0.78	+1.1
1,222,141	+	ymgG	b1172	0.79	+0.6
1,222,152	+	ymgG	b1172	0.83	+0.4
1,222,160	-	ymgG	b1172	0.85	-0.4
1,222,160	-	ymgG	b1172	0.85	+0.1
1,222,162	+	ymgG	b1172	0.86	+2.0
1,222,162	+	ymgG	b1172	0.86	+1.5
1,222,162	+	ymgG	b1172	0.86	+0.4
1,222,162	+	ymgG	b1172	0.86	+0.5
1,222,162	+	ymgG	b1172	0.86	-0.6
1,222,167	+	ymgG	b1172	0.87	-1.0
1,222,170	-	ymgG	b1172	0.88	-0.2
1,222,170	-	ymgG	b1172	0.88	+0.2
1,222,180	-				+0.4
1,222,219	+				-0.0
1,222,243	-	ymgI	b4593	0.17	-1.3
1,222,283	-	ymgI	b4593	0.40	-1.8
1,222,330	-	ymgI	b4593	0.67	+1.6
1,222,383	-				+1.0
1,222,415	+				-1.0
1,222,423	+				-0.1
1,222,423	+				+1.8
1,222,436	+				+0.1
1,222,512	+	ymgJ	b4594	0.13	+1.0
1,222,568	+	ymgJ	b4594	0.44	-0.4
1,222,571	-	ymgJ	b4594	0.45	+1.1
1,222,571	-	ymgJ	b4594	0.45	+0.6
1,222,583	-	ymgJ	b4594	0.52	-0.0
1,222,630	-	ymgJ	b4594	0.77	+0.4
1,222,630	-	ymgJ	b4594	0.77	+0.0
1,222,659	-				+0.1
1,222,703	-				+0.2
1,222,703	-				-0.2
1,222,703	-				+0.2
1,222,722	-				+0.8
1,222,753	+				+0.0
1,222,760	+				+0.3
1,222,760	+				+0.5
1,222,763	+				-0.2
1,222,768	-				-0.0
1,222,783	+				+0.7
1,222,846	+	ycgI	b4521	0.17	+0.2
1,222,857	-	ycgI	b4521	0.20	+0.5
1,222,981	+	ycgI	b4521	0.56	-0.3
1,223,000	+	ycgI	b4521	0.62	-0.4
1,223,000	+	ycgI	b4521	0.62	-0.0