Strain Fitness in Escherichia coli BW25113 around b3100

Experiment: LB + ciprofloxacin Time3hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + ciprofloxacin Time3hr
3,247,140	+	yqjC	b3097	0.40	+0.5
3,247,140	+	yqjC	b3097	0.40	+0.3
3,247,170	+	yqjC	b3097	0.49	-0.2
3,247,177	-	yqjC	b3097	0.50	-0.1
3,247,257	-	yqjC	b3097	0.72	-1.6
3,247,257	-	yqjC	b3097	0.72	-1.2
3,247,377	-				+0.2
3,247,382	+				-0.4
3,247,558	+	yqjD	b3098	0.53	-0.1
3,247,616	+	yqjD	b3098	0.72	-0.2
3,247,616	+	yqjD	b3098	0.72	-0.5
3,247,649	+	yqjD	b3098	0.82	-0.2
3,247,784	+	yqjE	b3099	0.20	+0.1
3,247,801	-	yqjE	b3099	0.24	-0.1
3,247,801	-	yqjE	b3099	0.24	-0.0
3,247,995	+	yqjE	b3099	0.72	-0.1
3,248,030	+	yqjE	b3099	0.80	-0.5
3,248,030	+	yqjE	b3099	0.80	+0.2
3,248,030	+	yqjE	b3099	0.80	+0.3
3,248,041	-	yqjE	b3099	0.83	+1.0
3,248,076	+				-0.1
3,248,140	-	yqjK	b3100	0.14	+0.6
3,248,140	-	yqjK	b3100	0.14	+1.1
3,248,162	+	yqjK	b3100	0.21	+0.2
3,248,281	+	yqjK	b3100	0.61	+0.3
3,248,281	+	yqjK	b3100	0.61	+0.4
3,248,309	-	yqjK	b3100	0.70	+0.5
3,248,309	-	yqjK	b3100	0.70	+0.3
3,248,323	-	yqjK	b3100	0.75	-0.3
3,248,326	+	yqjK	b3100	0.76	-0.3
3,248,384	-				-0.8
3,248,676	+	yqjF	b3101	0.23	-0.5
3,248,790	+	yqjF	b3101	0.52	-0.2
3,248,797	+	yqjF	b3101	0.54	+0.2
3,248,940	+				+0.1
3,248,948	-				-0.2
3,249,159	-	yqjG	b3102	0.11	-0.1
3,249,159	-	yqjG	b3102	0.11	+0.5
3,249,259	-	yqjG	b3102	0.22	-1.1
3,249,267	+	yqjG	b3102	0.22	+0.3
3,249,309	-	yqjG	b3102	0.27	+0.2
3,249,309	-	yqjG	b3102	0.27	+1.0
3,249,335	+	yqjG	b3102	0.29	+0.3
3,249,347	-	yqjG	b3102	0.30	-0.0
3,249,347	-	yqjG	b3102	0.30	+0.2