Strain Fitness in Escherichia coli BW25113 around b0381

Experiment: LB + ciprofloxacin Time3hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + ciprofloxacin Time3hr
398,318	-	yaiY	b0379	0.22	-0.1
398,351	+	yaiY	b0379	0.33	-0.4
398,386	-	yaiY	b0379	0.44	-0.3
398,386	-	yaiY	b0379	0.44	-0.1
398,392	-	yaiY	b0379	0.46	-0.5
398,392	-	yaiY	b0379	0.46	-0.4
398,593	-				-0.1
398,608	+				+0.1
398,613	-				-0.0
398,633	-				+0.4
398,755	+				+0.0
398,755	+				+0.4
398,809	+				-0.1
398,852	+	b0380	b0380	0.16	+0.2
398,860	-	b0380	b0380	0.20	+0.1
398,860	-	b0380	b0380	0.20	-0.2
398,883	+	b0380	b0380	0.31	-0.0
398,933	+	b0380	b0380	0.54	-0.1
398,933	+	b0380	b0380	0.54	+0.3
398,933	+	b0380	b0380	0.54	+0.8
398,959	-	b0380	b0380	0.67	+0.1
398,959	-	b0380	b0380	0.67	+0.6
399,034	+				-0.5
399,034	+				-0.5
399,079	+				-0.2
399,092	-				-0.1
399,092	-				+0.3
399,129	+				+0.6
399,129	+				+0.9
399,129	+				+0.4
399,137	-				+0.4
399,137	-				+0.2
399,217	+	ddlA	b0381	0.15	+0.4
399,376	-	ddlA	b0381	0.29	+1.1
399,376	-	ddlA	b0381	0.29	+0.1
399,531	+	ddlA	b0381	0.44	+0.1
399,549	-	ddlA	b0381	0.45	+0.7
399,549	-	ddlA	b0381	0.45	+0.7
399,659	-	ddlA	b0381	0.55	+0.1
399,707	-	ddlA	b0381	0.60	+0.3
399,727	+	ddlA	b0381	0.62	+0.2
399,727	+	ddlA	b0381	0.62	+0.5
399,787	+	ddlA	b0381	0.67	+0.5
399,824	+	ddlA	b0381	0.70	+0.9
399,916	+	ddlA	b0381	0.79	+0.3
399,933	+	ddlA	b0381	0.80	+0.7
399,948	+	ddlA	b0381	0.82	+0.2
399,948	+	ddlA	b0381	0.82	+0.9
400,092	+				+0.3
400,092	+				+1.7
400,093	+				+1.7
400,093	+				+1.5
400,168	+				+0.1
400,178	-				+0.1
400,240	+				-0.2
400,240	+				+0.7
400,251	+				-1.0
400,258	+				+0.4
400,263	+				-0.7
400,264	+				+0.1
400,282	-				+0.4
400,288	-				-0.0
400,373	+				-0.9
400,559	-				-0.1
400,561	+				+0.3
400,638	-	yaiB	b0382	0.11	+0.0
400,667	+	yaiB	b0382	0.22	-0.1
400,675	+	yaiB	b0382	0.25	-0.2
400,684	+	yaiB	b0382	0.28	+0.7
400,692	-	yaiB	b0382	0.31	-0.1
400,692	-	yaiB	b0382	0.31	+1.5
400,692	-	yaiB	b0382	0.31	-0.8
400,707	+	yaiB	b0382	0.37	+0.2
400,715	-	yaiB	b0382	0.40	+0.5
400,750	+	yaiB	b0382	0.54	-0.1
400,762	+	yaiB	b0382	0.58	+0.1
400,762	+	yaiB	b0382	0.58	-0.0
400,762	+	yaiB	b0382	0.58	+0.1
400,770	-	yaiB	b0382	0.61	+0.5
400,770	-	yaiB	b0382	0.61	-0.1
400,775	+	yaiB	b0382	0.63	-0.3
400,777	+	yaiB	b0382	0.64	+0.3
400,777	+	yaiB	b0382	0.64	+0.2
400,777	+	yaiB	b0382	0.64	+0.1
400,777	+	yaiB	b0382	0.64	-0.3
400,782	+	yaiB	b0382	0.66	-0.0
400,783	+	yaiB	b0382	0.66	+0.2
400,783	+	yaiB	b0382	0.66	+0.0
400,783	-	yaiB	b0382	0.66	+1.7
400,783	-	yaiB	b0382	0.66	-1.3
400,783	-	yaiB	b0382	0.66	+1.3
400,812	+	yaiB	b0382	0.77	-0.0
400,812	-	yaiB	b0382	0.77	+0.7
400,815	+	yaiB	b0382	0.79	+0.1
400,815	+	yaiB	b0382	0.79	-0.3
400,816	-	yaiB	b0382	0.79	+0.3
400,823	-	yaiB	b0382	0.82	-0.3
400,828	-	yaiB	b0382	0.84	-2.1
400,835	+	yaiB	b0382	0.86	+0.2
400,865	-				+0.7
400,898	-				+1.3
400,899	+				-0.3
400,901	-				+0.7
400,901	-				+0.4
400,915	+				-0.3
400,915	+				+0.1
400,982	-				-0.1
400,992	-				+2.7
400,998	-				+0.1
401,004	+				-0.2
401,006	-				-0.7
401,006	-				-0.4
401,015	-				+0.2
401,015	-				+0.3
401,020	-				-0.9
401,078	-				-0.0
401,086	-				+0.0
401,088	-				+0.0
401,088	-				-0.1
401,091	-				+0.7
401,091	-				-0.1
401,105	+				-0.5
401,113	-	phoA	b0383	0.10	-1.4
401,113	-	phoA	b0383	0.10	+0.3
401,113	-	phoA	b0383	0.10	-0.2
401,120	+	phoA	b0383	0.11	+0.5
401,123	+	phoA	b0383	0.11	+0.0
401,123	+	phoA	b0383	0.11	+0.3
401,125	+	phoA	b0383	0.11	+0.4
401,126	-	phoA	b0383	0.11	+0.0
401,133	-	phoA	b0383	0.11	-0.2