Strain Fitness in Escherichia coli BW25113 around b1121

Experiment: LB + carbenicillin Time1-2hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + carbenicillin Time1-2hr
1,178,708	+				-0.7
1,178,708	+				-0.2
1,178,766	+				+0.7
1,178,766	+				-0.1
1,178,875	+				-0.7
1,178,875	+				-0.3
1,178,880	-				+1.2
1,178,880	-				-0.1
1,179,036	-	cobB	b1120	0.25	-1.0
1,179,142	+	cobB	b1120	0.40	-0.0
1,179,161	+	cobB	b1120	0.42	+0.6
1,179,161	+	cobB	b1120	0.42	+0.4
1,179,195	-	cobB	b1120	0.47	-0.0
1,179,319	+	cobB	b1120	0.64	+0.1
1,179,396	+	cobB	b1120	0.74	+0.1
1,179,413	+	cobB	b1120	0.77	+0.7
1,179,413	+	cobB	b1120	0.77	-0.5
1,179,421	-	cobB	b1120	0.78	-0.0
1,179,526	+				+0.6
1,179,552	-				+1.5
1,179,584	+				+0.3
1,179,584	+				+0.3
1,179,584	+				-0.5
1,179,594	+				-0.1
1,179,758	-				-0.1
1,179,768	-				+0.9
1,179,785	+	ycfZ	b1121	0.11	+0.3
1,179,833	+	ycfZ	b1121	0.17	-0.2
1,179,837	-	ycfZ	b1121	0.17	-0.5
1,179,922	+	ycfZ	b1121	0.28	+1.5
1,179,922	+	ycfZ	b1121	0.28	+1.5
1,179,922	+	ycfZ	b1121	0.28	+1.5
1,179,922	+	ycfZ	b1121	0.28	+1.5
1,179,922	+	ycfZ	b1121	0.28	+1.5
1,179,943	+	ycfZ	b1121	0.31	+1.5
1,179,992	+	ycfZ	b1121	0.37	+1.5
1,180,234	-	ycfZ	b1121	0.67	+1.5
1,180,389	-	ycfZ	b1121	0.87	+1.5
1,180,389	-	ycfZ	b1121	0.87	+1.5
1,180,438	+				+1.5
1,180,457	+				+1.5
1,180,739	-	ymfA	b1122	0.55	+0.2
1,180,755	+	ymfA	b1122	0.58	+1.5
1,180,755	-	ymfA	b1122	0.58	+0.1
1,180,755	-	ymfA	b1122	0.58	+1.1
1,180,763	-	ymfA	b1122	0.60	-0.9
1,180,777	-	ymfA	b1122	0.63	-1.0
1,180,777	-	ymfA	b1122	0.63	-1.0
1,180,777	-	ymfA	b1122	0.63	+1.0
1,180,777	-	ymfA	b1122	0.63	-0.5
1,180,777	-	ymfA	b1122	0.63	+0.7
1,180,777	-	ymfA	b1122	0.63	-0.5
1,180,778	-	ymfA	b1122	0.63	+0.1
1,180,796	+	ymfA	b1122	0.67	-0.1
1,180,796	+	ymfA	b1122	0.67	+0.5
1,180,799	-	ymfA	b1122	0.68	-0.2
1,180,800	-	ymfA	b1122	0.68	-0.1
1,180,803	-	ymfA	b1122	0.68	-0.1
1,180,809	+	ymfA	b1122	0.70	+1.1
1,180,813	+	ymfA	b1122	0.71	+0.6
1,180,817	-	ymfA	b1122	0.71	-0.4
1,180,834	-	ymfA	b1122	0.75	+0.1
1,180,838	-	ymfA	b1122	0.76	-1.1
1,180,854	-	ymfA	b1122	0.79	-0.3
1,180,869	-	ymfA	b1122	0.83	-0.4
1,180,881	+	ymfA	b1122	0.85	-0.4
1,180,881	+	ymfA	b1122	0.85	-0.0
1,180,890	+	ymfA	b1122	0.87	-0.5
1,180,894	+	ymfA	b1122	0.88	+0.1
1,180,894	+	ymfA	b1122	0.88	+0.2
1,180,894	+	ymfA	b1122	0.88	+0.3
1,180,900	+	ymfA	b1122	0.89	-0.4
1,180,900	+	ymfA	b1122	0.89	+0.4
1,180,902	-				+0.6
1,180,908	-				+1.0
1,180,937	+				-0.4
1,180,945	-				-0.5
1,180,945	-				+1.5
1,180,953	-				-0.2
1,180,959	-				+0.1
1,180,988	-				+0.3
1,180,988	-				+1.2
1,180,989	-				-1.1
1,180,989	-				+1.0
1,181,036	-				-0.3
1,181,046	-				-1.1
1,181,101	+				+0.5
1,181,101	+				+1.5
1,181,170	-	potD	b1123	0.16	-0.5
1,181,280	-	potD	b1123	0.26	-0.3
1,181,280	-	potD	b1123	0.26	-0.7
1,181,421	+	potD	b1123	0.40	-1.5
1,181,480	-	potD	b1123	0.45	+0.3