Strain Fitness in Escherichia coli BW25113 around b0803

Experiment: LB + carbenicillin Time1-2hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybiC and ybiJ are separated by 228 nucleotidesybiJ and ybiI are separated by 264 nucleotidesybiI and ybiX are separated by 73 nucleotidesybiX and fiu are separated by 41 nucleotides b0801: ybiC - predicted dehydrogenase (NCBI), at 835,574 to 836,659 ybiC b0802: ybiJ - hypothetical protein (NCBI), at 836,888 to 837,148 ybiJ b0803: ybiI - hypothetical protein (NCBI), at 837,413 to 837,679 ybiI b0804: ybiX - putative enzyme (VIMSS), at 837,753 to 838,430 ybiX b0805: fiu - predicted iron outer membrane transporter (NCBI), at 838,472 to 840,754 fiu Position (kb) 837 838Strain fitness (log2 ratio) -2 -1 0 1at 836.634 kb on - strandat 836.645 kb on + strandat 836.723 kb on - strandat 836.768 kb on - strandat 836.787 kb on - strandat 836.938 kb on + strand, within ybiJat 837.079 kb on - strand, within ybiJat 837.104 kb on + strand, within ybiJat 837.196 kb on - strandat 837.320 kb on + strandat 837.320 kb on + strandat 837.320 kb on + strandat 837.320 kb on + strandat 837.389 kb on + strandat 837.406 kb on + strandat 837.438 kb on - strandat 837.438 kb on - strandat 837.446 kb on + strand, within ybiIat 837.550 kb on - strand, within ybiIat 837.567 kb on - strand, within ybiIat 837.576 kb on - strand, within ybiIat 837.630 kb on + strand, within ybiIat 837.638 kb on - strand, within ybiIat 837.723 kb on + strandat 837.800 kb on + strandat 837.853 kb on - strand, within ybiXat 838.096 kb on + strand, within ybiXat 838.096 kb on + strand, within ybiXat 838.140 kb on - strand, within ybiXat 838.140 kb on - strand, within ybiXat 838.195 kb on - strand, within ybiXat 838.195 kb on - strand, within ybiXat 838.195 kb on - strand, within ybiXat 838.253 kb on - strand, within ybiXat 838.511 kb on - strandat 838.511 kb on - strandat 838.519 kb on + strandat 838.563 kb on + strandat 838.596 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + carbenicillin Time1-2hr
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836,634 - -0.4
836,645 + -0.1
836,723 - -0.1
836,768 - +0.1
836,787 - +0.0
836,938 + ybiJ b0802 0.19 -0.1
837,079 - ybiJ b0802 0.73 +0.6
837,104 + ybiJ b0802 0.83 +0.5
837,196 - +0.1
837,320 + +0.0
837,320 + +0.4
837,320 + -0.3
837,320 + +0.0
837,389 + +0.1
837,406 + -1.1
837,438 - -0.2
837,438 - +0.2
837,446 + ybiI b0803 0.12 +0.3
837,550 - ybiI b0803 0.51 -0.6
837,567 - ybiI b0803 0.58 +0.4
837,576 - ybiI b0803 0.61 +0.4
837,630 + ybiI b0803 0.81 +0.6
837,638 - ybiI b0803 0.84 +0.3
837,723 + -0.0
837,800 + -0.0
837,853 - ybiX b0804 0.15 +0.0
838,096 + ybiX b0804 0.51 -1.9
838,096 + ybiX b0804 0.51 -0.4
838,140 - ybiX b0804 0.57 +1.1
838,140 - ybiX b0804 0.57 +0.0
838,195 - ybiX b0804 0.65 -0.2
838,195 - ybiX b0804 0.65 +0.4
838,195 - ybiX b0804 0.65 +0.1
838,253 - ybiX b0804 0.74 -0.0
838,511 - -0.1
838,511 - -0.1
838,519 + +0.3
838,563 + +0.0
838,596 - +0.0

Or see this region's nucleotide sequence