Strain Fitness in Escherichia coli BW25113 around b4280

Experiment: LB + ciprofloxacin Time3hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + ciprofloxacin Time3hr
4,502,363	+	yjhB	b4279	0.23	+0.9
4,502,794	+	yjhB	b4279	0.59	+1.9
4,503,626	+	yjhC	b4280	0.28	+1.9
4,503,638	+	yjhC	b4280	0.29	+2.5
4,503,647	+	yjhC	b4280	0.30	+0.9
4,503,648	+	yjhC	b4280	0.30	-0.4
4,503,648	+	yjhC	b4280	0.30	-0.1
4,503,814	+	yjhC	b4280	0.45	+0.9
4,503,826	+	yjhC	b4280	0.46	+0.9
4,503,830	+	yjhC	b4280	0.46	+2.5
4,503,900	+	yjhC	b4280	0.53	+0.3
4,503,911	+	yjhC	b4280	0.54	+0.2
4,503,911	+	yjhC	b4280	0.54	+1.0
4,503,985	+	yjhC	b4280	0.60	+2.9
4,503,985	+	yjhC	b4280	0.60	+0.6
4,503,986	+	yjhC	b4280	0.60	-1.7
4,503,990	+	yjhC	b4280	0.61	+1.3
4,503,991	+	yjhC	b4280	0.61	+1.9
4,503,991	+	yjhC	b4280	0.61	+1.7
4,503,999	-	yjhC	b4280	0.62	-0.7
4,504,003	+	yjhC	b4280	0.62	+0.9
4,504,018	+	yjhC	b4280	0.63	+0.4
4,504,084	-	yjhC	b4280	0.69	+0.9
4,504,085	+	yjhC	b4280	0.69	-0.1
4,504,086	+	yjhC	b4280	0.69	-0.1
4,504,086	+	yjhC	b4280	0.69	+0.6
4,504,091	+	yjhC	b4280	0.70	+0.3
4,504,138	+	yjhC	b4280	0.74	+0.0
4,504,159	+	yjhC	b4280	0.76	+0.0
4,504,159	+	yjhC	b4280	0.76	-0.2
4,504,174	+	yjhC	b4280	0.77	+0.2
4,504,184	+	yjhC	b4280	0.78	-0.1
4,504,184	+	yjhC	b4280	0.78	+0.7
4,504,187	+	yjhC	b4280	0.78	+0.1
4,504,187	+	yjhC	b4280	0.78	-0.1
4,504,191	+	yjhC	b4280	0.79	+0.6
4,504,191	+	yjhC	b4280	0.79	+0.5
4,504,191	+	yjhC	b4280	0.79	-0.2
4,504,191	+	yjhC	b4280	0.79	+0.3
4,504,191	+	yjhC	b4280	0.79	+1.2
4,504,221	+	yjhC	b4280	0.81	+0.3
4,504,268	+	yjhC	b4280	0.86	-0.4
4,504,277	-	yjhC	b4280	0.86	+0.9
4,504,316	+	yjhC	b4280	0.90	+0.1
4,504,318	+				-0.4
4,504,318	+				+0.8
4,504,319	+				+0.2
4,504,319	+				-0.8
4,504,319	-				+0.9
4,504,322	-				+0.1
4,504,327	-				+1.9
4,504,334	-				+0.9
4,504,334	-				+0.9
4,504,336	+				+0.6
4,504,346	+				-0.1
4,504,346	+				+0.1
4,504,347	+				+0.4
4,504,348	+				-0.2
4,504,348	+				+0.3
4,504,361	+				+0.7
4,504,362	+				-0.4
4,504,362	+				+0.6
4,504,363	+				+0.4
4,504,370	+				-0.2
4,504,370	+				-0.1
4,504,396	+				-0.2
4,504,396	+				+0.0
4,504,403	+				-0.2
4,504,404	+				-0.2
4,504,413	+				-0.2
4,504,572	-	ythA	b4655	0.80	+0.5
4,504,576	-	ythA	b4655	0.83	-1.7
4,504,576	-	ythA	b4655	0.83	-0.7
4,504,613	-				-0.3
4,504,613	-				-0.0
4,504,613	-				+0.1
4,504,613	-				+0.1
4,504,613	-				+0.2
4,504,626	-				-0.0
4,504,626	-				+0.0
4,504,628	-				+0.1
4,504,629	-				+0.9
4,504,631	+				+0.9
4,504,647	-				+0.3
4,504,680	-	yjhD	b4281	0.13	-0.2
4,504,682	-	yjhD	b4281	0.14	-0.1
4,504,682	-	yjhD	b4281	0.14	+0.1
4,504,682	-	yjhD	b4281	0.14	+0.2
4,504,683	+	yjhD	b4281	0.15	+0.9
4,504,683	-	yjhD	b4281	0.15	+0.1
4,504,691	-	yjhD	b4281	0.18	+0.1
4,504,694	-	yjhD	b4281	0.19	-0.4
4,504,694	-	yjhD	b4281	0.19	-0.0
4,504,706	-	yjhD	b4281	0.25	-0.4
4,504,706	-	yjhD	b4281	0.25	-1.0
4,504,714	+	yjhD	b4281	0.28	+0.9
4,504,714	+	yjhD	b4281	0.28	+0.9
4,504,722	-	yjhD	b4281	0.32	-0.7
4,504,722	-	yjhD	b4281	0.32	+0.3
4,504,736	-	yjhD	b4281	0.38	-0.2
4,504,739	-	yjhD	b4281	0.39	-0.1
4,504,741	-	yjhD	b4281	0.40	-0.9
4,504,749	+	yjhD	b4281	0.43	-1.3
4,504,751	-	yjhD	b4281	0.44	+0.2
4,504,751	-	yjhD	b4281	0.44	-0.1
4,504,758	-	yjhD	b4281	0.47	+0.1
4,504,758	-	yjhD	b4281	0.47	+0.9
4,504,765	-	yjhD	b4281	0.50	-0.0
4,504,793	-	yjhD	b4281	0.62	+0.2
4,504,823	+	yjhD	b4281	0.75	+0.3
4,504,823	+	yjhD	b4281	0.75	+2.5
4,504,823	+	yjhD	b4281	0.75	+0.9
4,504,831	-	yjhD	b4281	0.79	+0.6
4,504,831	-	yjhD	b4281	0.79	-0.2
4,504,831	-	yjhD	b4281	0.79	-0.3
4,504,831	-	yjhD	b4281	0.79	+0.1
4,504,840	-	yjhD	b4281	0.83	-0.2
4,504,840	-	yjhD	b4281	0.83	+0.5
4,504,841	-	yjhD	b4281	0.83	-0.1
4,504,841	-	yjhD	b4281	0.83	-0.4
4,504,841	-	yjhD	b4281	0.83	+0.6
4,504,841	-	yjhD	b4281	0.83	+0.7
4,504,841	-	yjhD	b4281	0.83	-0.1
4,504,842	+	yjhD	b4281	0.84	-0.7
4,504,842	+	yjhD	b4281	0.84	+0.2
4,504,842	+	yjhD	b4281	0.84	-0.2
4,504,850	-	yjhD	b4281	0.87	+0.0
4,504,850	-	yjhD	b4281	0.87	+0.5
4,504,852	+	yjhD	b4281	0.88	-0.1
4,504,852	+	yjhD	b4281	0.88	-0.5
4,504,852	+	yjhD	b4281	0.88	-0.1
4,504,852	-	yjhD	b4281	0.88	-0.2
4,504,854	+	yjhD	b4281	0.89	-0.4
4,504,859	+				-1.5
4,504,859	+				-0.6
4,504,859	-				+0.2
4,504,861	-				+0.0
4,504,864	-				-0.0
4,504,864	-				+0.1
4,504,864	-				+0.0
4,504,866	+				-0.2
4,504,874	+				+0.2
4,504,874	-				-0.1
4,504,874	-				+0.7
4,504,882	-				+0.2
4,504,882	-				-0.1
4,504,882	-				-0.6
4,504,882	-				+0.5
4,504,882	-				+0.1
4,504,889	-				+0.3
4,504,906	-				+0.3
4,504,906	-				+0.2
4,504,906	-				+0.4
4,504,907	-				+0.6
4,504,907	-				+0.8
4,504,911	-	yjhE	b4282	0.11	-0.1
4,504,912	-	yjhE	b4282	0.11	+0.2
4,504,913	+	yjhE	b4282	0.12	+0.1
4,504,913	+	yjhE	b4282	0.12	+0.5
4,504,913	+	yjhE	b4282	0.12	-0.1
4,504,914	+	yjhE	b4282	0.12	+0.2
4,504,921	-	yjhE	b4282	0.15	-0.0
4,504,923	+	yjhE	b4282	0.16	+0.1
4,504,923	+	yjhE	b4282	0.16	-0.1
4,504,923	+	yjhE	b4282	0.16	+0.2
4,504,933	+	yjhE	b4282	0.20	+0.0
4,504,933	+	yjhE	b4282	0.20	-0.1
4,504,973	-	yjhE	b4282	0.36	+0.3
4,505,015	-	yjhE	b4282	0.53	+0.4
4,505,058	+	yjhE	b4282	0.70	-0.1
4,505,058	+	yjhE	b4282	0.70	+0.3
4,505,078	+	yjhE	b4282	0.78	-0.6
4,505,078	+	yjhE	b4282	0.78	-0.3
4,505,097	-	yjhE	b4282	0.86	-0.5
4,505,097	-	yjhE	b4282	0.86	+0.2
4,505,121	-				+0.2
4,505,123	-				+0.5
4,505,124	-				+0.2
4,505,126	-				+0.0
4,505,126	-				+0.3
4,505,144	+				+0.6
4,505,147	-				+0.0
4,505,147	-				-0.7
4,505,152	-				-0.0
4,505,152	-				-0.1
4,505,162	+				-0.7
4,505,162	+				+0.7
4,505,165	-				-0.4
4,505,169	-				+0.4
4,505,181	+				-0.0
4,505,181	+				+1.4
4,505,181	-				+0.2
4,505,181	-				-1.0
4,505,181	-				-0.5
4,505,191	+				+0.3
4,505,191	+				+3.5
4,505,196	+				-0.6
4,505,204	+				-0.4
4,505,204	-				-0.3
4,505,204	-				+0.2
4,505,204	-				+0.2
4,505,206	+				-0.5
4,505,207	-				-0.1
4,505,207	-				-0.0
4,505,209	-				+0.1
4,505,212	-				+0.1
4,505,267	+	insO	b4623	0.18	+0.7
4,505,282	+	insO	b4623	0.24	-0.5
4,505,288	-	insO	b4623	0.27	+0.2
4,505,290	-	insO	b4623	0.27	-0.2
4,505,290	-	insO	b4623	0.27	+0.7
4,505,290	-	insO	b4623	0.27	-0.0
4,505,311	-	insO	b4623	0.36	-0.5
4,505,311	-	insO	b4623	0.36	+0.0
4,505,327	+	insO	b4623	0.42	+0.7
4,505,334	-	insO	b4623	0.45	+0.2
4,505,335	-	insO	b4623	0.45	+0.2
4,505,336	+	insO	b4623	0.45	+0.4
4,505,346	+	insO	b4623	0.49	-0.1
4,505,349	+	insO	b4623	0.51	-0.4
4,505,349	+	insO	b4623	0.51	+1.3
4,505,357	+	insO	b4623	0.54	-0.1
4,505,357	+	insO	b4623	0.54	+0.4
4,505,357	-	insO	b4623	0.54	-1.5
4,505,362	-	insO	b4623	0.56	+0.1
4,505,399	-	insO	b4623	0.70	+0.2