Strain Fitness in Escherichia coli BW25113 around b0802

Experiment: LB + ciprofloxacin Time3hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybiC and ybiJ are separated by 228 nucleotidesybiJ and ybiI are separated by 264 nucleotidesybiI and ybiX are separated by 73 nucleotides b0801: ybiC - predicted dehydrogenase (NCBI), at 835,574 to 836,659 ybiC b0802: ybiJ - hypothetical protein (NCBI), at 836,888 to 837,148 ybiJ b0803: ybiI - hypothetical protein (NCBI), at 837,413 to 837,679 ybiI b0804: ybiX - putative enzyme (VIMSS), at 837,753 to 838,430 ybiX Position (kb) 836 837 838Strain fitness (log2 ratio) -1 0 1at 835.971 kb on - strand, within ybiCat 836.021 kb on - strand, within ybiCat 836.278 kb on + strand, within ybiCat 836.278 kb on + strand, within ybiCat 836.362 kb on - strand, within ybiCat 836.383 kb on - strand, within ybiCat 836.634 kb on - strandat 836.645 kb on + strandat 836.723 kb on - strandat 836.768 kb on - strandat 836.787 kb on - strandat 836.938 kb on + strand, within ybiJat 837.079 kb on - strand, within ybiJat 837.104 kb on + strand, within ybiJat 837.196 kb on - strandat 837.320 kb on + strandat 837.320 kb on + strandat 837.320 kb on + strandat 837.320 kb on + strandat 837.389 kb on + strandat 837.406 kb on + strandat 837.438 kb on - strandat 837.438 kb on - strandat 837.446 kb on + strand, within ybiIat 837.550 kb on - strand, within ybiIat 837.567 kb on - strand, within ybiIat 837.576 kb on - strand, within ybiIat 837.630 kb on + strand, within ybiIat 837.638 kb on - strand, within ybiIat 837.723 kb on + strandat 837.800 kb on + strandat 837.853 kb on - strand, within ybiXat 838.096 kb on + strand, within ybiXat 838.096 kb on + strand, within ybiXat 838.140 kb on - strand, within ybiXat 838.140 kb on - strand, within ybiX

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + ciprofloxacin Time3hr
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835,971 - ybiC b0801 0.37 +0.2
836,021 - ybiC b0801 0.41 -0.2
836,278 + ybiC b0801 0.65 -0.3
836,278 + ybiC b0801 0.65 -0.5
836,362 - ybiC b0801 0.73 +0.3
836,383 - ybiC b0801 0.74 -0.3
836,634 - +0.2
836,645 + +0.0
836,723 - +0.1
836,768 - +0.6
836,787 - -0.1
836,938 + ybiJ b0802 0.19 +0.2
837,079 - ybiJ b0802 0.73 +0.5
837,104 + ybiJ b0802 0.83 +0.6
837,196 - +0.2
837,320 + +0.1
837,320 + +0.6
837,320 + +0.3
837,320 + -0.5
837,389 + -0.6
837,406 + -0.4
837,438 - +0.1
837,438 - +0.1
837,446 + ybiI b0803 0.12 -0.1
837,550 - ybiI b0803 0.51 -0.1
837,567 - ybiI b0803 0.58 +0.2
837,576 - ybiI b0803 0.61 -0.1
837,630 + ybiI b0803 0.81 -0.2
837,638 - ybiI b0803 0.84 +0.7
837,723 + +0.1
837,800 + -0.2
837,853 - ybiX b0804 0.15 +0.2
838,096 + ybiX b0804 0.51 +0.3
838,096 + ybiX b0804 0.51 +0.3
838,140 - ybiX b0804 0.57 +0.6
838,140 - ybiX b0804 0.57 +0.2

Or see this region's nucleotide sequence