Strain Fitness in Pseudomonas putida KT2440 around PP_0007

Experiment: No phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0006 and PP_0007 are separated by 2 nucleotidesPP_0007 and PP_0008 overlap by 8 nucleotidesPP_0008 and PP_0009 are separated by 13 nucleotides PP_0006: PP_0006 - probable membrane protein insertase, at 6,471 to 8,153 _0006 PP_0007: PP_0007 - conserved hypothetical protein, at 8,156 to 8,401 _0007 PP_0008: PP_0008 - ribonuclease P protein component, at 8,394 to 8,798 _0008 PP_0009: PP_0009 - 50S ribosomal protein L34, at 8,812 to 8,946 _0009 Position (kb) 8 9Strain fitness (log2 ratio) -2 -1 0 1at 8.209 kb on - strand, within PP_0007at 8.209 kb on - strand, within PP_0007at 8.299 kb on - strandat 8.299 kb on - strand, within PP_0007at 8.354 kb on - strand, within PP_0007at 8.396 kb on - strandat 9.056 kb on - strandat 9.058 kb on - strandat 9.058 kb on - strandat 9.058 kb on - strandat 9.058 kb on - strandat 9.152 kb on + strandat 9.154 kb on + strandat 9.154 kb on + strandat 9.155 kb on - strandat 9.177 kb on - strandat 9.186 kb on - strandat 9.238 kb on + strandat 9.238 kb on + strandat 9.249 kb on - strandat 9.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No phage control
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8,209 - PP_0007 0.22 -0.1
8,209 - PP_0007 0.22 +1.1
8,299 - +0.1
8,299 - PP_0007 0.58 +0.6
8,354 - PP_0007 0.80 +0.6
8,396 - -0.0
9,056 - -0.3
9,058 - +0.4
9,058 - -1.4
9,058 - +0.8
9,058 - -2.6
9,152 + -0.9
9,154 + +0.1
9,154 + -0.5
9,155 - -0.8
9,177 - -0.6
9,186 - -1.9
9,238 + -0.4
9,238 + +0.1
9,249 - -1.7
9,395 - +0.3

Or see this region's nucleotide sequence