Strain Fitness in Escherichia coli BW25113 around b4640

Experiment: LB + carbenicillin Time1-2hr

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinsH-6 and yoeG are separated by 38 nucleotidesyoeG and yoeH are separated by 368 nucleotidesyoeH and yoeA are separated by 215 nucleotides b1994: insH-6 - CP4-44 prophage; IS5 transposase and trans-activator (NCBI), at 2,064,329 to 2,065,345 insH-6 b4640: yoeG - no description, at 2,065,384 to 2,065,916 yoeG b4641: yoeH - no description, at 2,066,285 to 2,066,443 yoeH b4582: yoeA - no description, at 2,066,659 to 2,066,962 yoeA Position (kb) 2065 2066Strain fitness (log2 ratio) -1 0 1 2 3at 2065.375 kb on + strandat 2065.413 kb on - strandat 2065.421 kb on + strandat 2065.483 kb on - strand, within yoeGat 2065.512 kb on + strand, within yoeGat 2065.543 kb on + strand, within yoeGat 2065.543 kb on + strand, within yoeGat 2065.551 kb on - strand, within yoeGat 2065.551 kb on - strand, within yoeGat 2065.560 kb on + strand, within yoeGat 2065.601 kb on + strand, within yoeGat 2065.611 kb on - strand, within yoeGat 2065.611 kb on - strand, within yoeGat 2065.612 kb on + strand, within yoeGat 2065.653 kb on + strand, within yoeGat 2065.661 kb on - strand, within yoeGat 2065.664 kb on + strand, within yoeGat 2065.666 kb on - strand, within yoeGat 2065.712 kb on - strand, within yoeGat 2065.782 kb on + strand, within yoeGat 2065.858 kb on - strand, within yoeGat 2065.858 kb on - strand, within yoeGat 2065.858 kb on - strand, within yoeGat 2065.891 kb on - strandat 2065.920 kb on + strandat 2065.925 kb on - strandat 2065.925 kb on - strandat 2065.979 kb on - strandat 2066.049 kb on - strandat 2066.102 kb on - strandat 2066.119 kb on - strandat 2066.119 kb on - strandat 2066.129 kb on - strandat 2066.129 kb on - strandat 2066.133 kb on - strandat 2066.134 kb on - strandat 2066.134 kb on - strandat 2066.134 kb on - strandat 2066.138 kb on - strandat 2066.196 kb on - strandat 2066.202 kb on - strandat 2066.202 kb on - strandat 2066.204 kb on + strandat 2066.207 kb on - strandat 2066.207 kb on - strandat 2066.210 kb on + strandat 2066.210 kb on + strandat 2066.220 kb on + strandat 2066.229 kb on - strandat 2066.229 kb on - strandat 2066.289 kb on + strandat 2066.295 kb on - strandat 2066.297 kb on - strandat 2066.297 kb on - strandat 2066.301 kb on + strand, within yoeHat 2066.302 kb on - strand, within yoeHat 2066.302 kb on - strand, within yoeHat 2066.303 kb on - strand, within yoeHat 2066.303 kb on - strand, within yoeHat 2066.309 kb on - strand, within yoeHat 2066.309 kb on - strand, within yoeHat 2066.309 kb on - strand, within yoeHat 2066.309 kb on - strand, within yoeHat 2066.341 kb on - strand, within yoeHat 2066.341 kb on - strand, within yoeHat 2066.351 kb on - strand, within yoeHat 2066.379 kb on - strand, within yoeHat 2066.389 kb on - strand, within yoeHat 2066.426 kb on - strand, within yoeHat 2066.434 kb on - strandat 2066.460 kb on - strandat 2066.460 kb on - strandat 2066.464 kb on - strandat 2066.464 kb on - strandat 2066.468 kb on + strandat 2066.468 kb on + strandat 2066.478 kb on + strandat 2066.483 kb on + strandat 2066.506 kb on - strandat 2066.506 kb on - strandat 2066.654 kb on + strandat 2066.654 kb on + strandat 2066.675 kb on - strandat 2066.787 kb on - strand, within yoeAat 2066.841 kb on - strand, within yoeA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB + carbenicillin Time1-2hr
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2,065,375 + -0.0
2,065,413 - +0.2
2,065,421 + +0.4
2,065,483 - yoeG b4640 0.19 +1.7
2,065,512 + yoeG b4640 0.24 -0.3
2,065,543 + yoeG b4640 0.30 +0.4
2,065,543 + yoeG b4640 0.30 -1.3
2,065,551 - yoeG b4640 0.31 +2.2
2,065,551 - yoeG b4640 0.31 +1.3
2,065,560 + yoeG b4640 0.33 +0.0
2,065,601 + yoeG b4640 0.41 -1.4
2,065,611 - yoeG b4640 0.43 +1.7
2,065,611 - yoeG b4640 0.43 +3.3
2,065,612 + yoeG b4640 0.43 +0.2
2,065,653 + yoeG b4640 0.50 +1.7
2,065,661 - yoeG b4640 0.52 +1.7
2,065,664 + yoeG b4640 0.53 +1.7
2,065,666 - yoeG b4640 0.53 +1.7
2,065,712 - yoeG b4640 0.62 +1.7
2,065,782 + yoeG b4640 0.75 +1.7
2,065,858 - yoeG b4640 0.89 +1.7
2,065,858 - yoeG b4640 0.89 +1.7
2,065,858 - yoeG b4640 0.89 +1.7
2,065,891 - +1.7
2,065,920 + +1.7
2,065,925 - +1.7
2,065,925 - +2.7
2,065,979 - +1.0
2,066,049 - -0.5
2,066,102 - +0.7
2,066,119 - +0.2
2,066,119 - -0.1
2,066,129 - -1.4
2,066,129 - +0.7
2,066,133 - +0.2
2,066,134 - -0.3
2,066,134 - -1.3
2,066,134 - +0.4
2,066,138 - +0.7
2,066,196 - +0.1
2,066,202 - +0.7
2,066,202 - +0.9
2,066,204 + +0.2
2,066,207 - +0.7
2,066,207 - +0.5
2,066,210 + +0.2
2,066,210 + +0.2
2,066,220 + -0.1
2,066,229 - -0.2
2,066,229 - +1.7
2,066,289 + -1.3
2,066,295 - +1.5
2,066,297 - +0.5
2,066,297 - -1.3
2,066,301 + yoeH b4641 0.10 +1.7
2,066,302 - yoeH b4641 0.11 -0.5
2,066,302 - yoeH b4641 0.11 +0.6
2,066,303 - yoeH b4641 0.11 +0.2
2,066,303 - yoeH b4641 0.11 -0.8
2,066,309 - yoeH b4641 0.15 -1.1
2,066,309 - yoeH b4641 0.15 +0.7
2,066,309 - yoeH b4641 0.15 +0.0
2,066,309 - yoeH b4641 0.15 +0.5
2,066,341 - yoeH b4641 0.35 +0.7
2,066,341 - yoeH b4641 0.35 -0.2
2,066,351 - yoeH b4641 0.42 -0.2
2,066,379 - yoeH b4641 0.59 -0.1
2,066,389 - yoeH b4641 0.65 +0.1
2,066,426 - yoeH b4641 0.89 -0.4
2,066,434 - -0.1
2,066,460 - +0.3
2,066,460 - -0.6
2,066,464 - -0.0
2,066,464 - -0.9
2,066,468 + +1.7
2,066,468 + -0.1
2,066,478 + +0.2
2,066,483 + +0.2
2,066,506 - +0.6
2,066,506 - +0.6
2,066,654 + +0.4
2,066,654 + -0.1
2,066,675 - -0.9
2,066,787 - yoeA b4582 0.42 -0.5
2,066,841 - yoeA b4582 0.60 +0.5

Or see this region's nucleotide sequence