Strain Fitness in Escherichia coli BW25113 around b1045

Experiment: LB + carbenicillin Time1-2hr

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB + carbenicillin Time1-2hr
1,104,045	-	csgA	b1042	0.82	+0.3
1,104,045	-	csgA	b1042	0.82	-0.5
1,104,055	-	csgA	b1042	0.84	-0.3
1,104,055	-	csgA	b1042	0.84	+0.2
1,104,065	-	csgA	b1042	0.87	+0.4
1,104,119	+				-1.4
1,104,119	+				-0.4
1,104,128	+				-0.3
1,104,227	+	csgC	b1043	0.13	+0.7
1,104,241	-	csgC	b1043	0.17	-0.9
1,104,253	+	csgC	b1043	0.21	+1.7
1,104,255	+	csgC	b1043	0.21	+1.5
1,104,255	+	csgC	b1043	0.21	+0.3
1,104,255	+	csgC	b1043	0.21	+0.4
1,104,255	+	csgC	b1043	0.21	-1.2
1,104,261	-	csgC	b1043	0.23	+0.2
1,104,261	-	csgC	b1043	0.23	-0.3
1,104,268	-	csgC	b1043	0.25	-0.8
1,104,268	-	csgC	b1043	0.25	+0.5
1,104,274	-	csgC	b1043	0.27	-0.2
1,104,286	-	csgC	b1043	0.31	-0.1
1,104,286	-	csgC	b1043	0.31	-0.2
1,104,300	-	csgC	b1043	0.35	+0.0
1,104,319	-	csgC	b1043	0.41	-0.1
1,104,332	+	csgC	b1043	0.44	-0.3
1,104,332	+	csgC	b1043	0.44	+0.3
1,104,340	-	csgC	b1043	0.47	-0.5
1,104,340	-	csgC	b1043	0.47	+0.7
1,104,340	-	csgC	b1043	0.47	+0.1
1,104,340	-	csgC	b1043	0.47	-0.8
1,104,342	+	csgC	b1043	0.47	+0.0
1,104,343	+	csgC	b1043	0.48	-1.1
1,104,377	+	csgC	b1043	0.58	+1.0
1,104,383	-	csgC	b1043	0.60	-0.2
1,104,388	-	csgC	b1043	0.61	-0.2
1,104,443	-	csgC	b1043	0.78	-0.3
1,104,466	+	csgC	b1043	0.85	+0.8
1,104,476	-	csgC	b1043	0.88	-0.5
1,104,492	-				-0.1
1,104,508	-				+0.0
1,104,553	+				-0.1
1,104,558	+				+0.2
1,104,558	+				-0.5
1,104,577	+				-2.2
1,104,597	-				+1.0
1,104,599	+				+0.4
1,104,607	-				+1.1
1,104,708	-	ymdA	b1044	0.23	-0.9
1,104,712	+	ymdA	b1044	0.24	+2.3
1,104,712	+	ymdA	b1044	0.24	+0.1
1,104,712	+	ymdA	b1044	0.24	+0.5
1,104,712	+	ymdA	b1044	0.24	+0.1
1,104,720	-	ymdA	b1044	0.27	-1.1
1,104,720	-	ymdA	b1044	0.27	-0.0
1,104,720	-	ymdA	b1044	0.27	-0.0
1,104,721	+	ymdA	b1044	0.27	+2.1
1,104,764	-	ymdA	b1044	0.41	-0.3
1,104,765	+	ymdA	b1044	0.41	+0.7
1,104,765	+	ymdA	b1044	0.41	+1.7
1,104,770	+	ymdA	b1044	0.43	+0.5
1,104,777	+	ymdA	b1044	0.45	+0.1
1,104,777	+	ymdA	b1044	0.45	-1.1
1,104,777	+	ymdA	b1044	0.45	-0.3
1,104,792	-	ymdA	b1044	0.50	-0.2
1,104,808	-	ymdA	b1044	0.55	+0.9
1,104,812	+	ymdA	b1044	0.56	-0.8
1,104,820	-	ymdA	b1044	0.59	+0.2
1,104,820	-	ymdA	b1044	0.59	-0.1
1,104,886	+	ymdA	b1044	0.80	-0.4
1,104,892	-	ymdA	b1044	0.82	+0.9
1,104,929	-				+0.9
1,104,929	-				-0.2
1,104,980	-				+0.1
1,104,980	-				-0.3
1,105,072	-				+0.8
1,105,085	-				-0.4
1,105,159	+	ymdB	b1045	0.22	+0.5
1,105,159	+	ymdB	b1045	0.22	-0.3
1,105,285	-	ymdB	b1045	0.45	-0.5
1,105,313	-	ymdB	b1045	0.51	+0.4
1,105,313	-	ymdB	b1045	0.51	-0.5
1,105,353	+	ymdB	b1045	0.58	+0.2
1,105,358	+	ymdB	b1045	0.59	-0.2
1,105,414	+	ymdB	b1045	0.69	+1.0
1,105,501	+	ymdB	b1045	0.86	+0.5
1,105,501	+	ymdB	b1045	0.86	+1.0
1,105,501	+	ymdB	b1045	0.86	+0.8
1,105,535	+				+0.3
1,105,639	-				-0.1
1,105,729	-	ymdC	b1046	0.11	-0.5
1,105,770	+	ymdC	b1046	0.14	+0.4
1,105,770	+	ymdC	b1046	0.14	+0.6
1,105,770	+	ymdC	b1046	0.14	+0.3
1,105,770	+	ymdC	b1046	0.14	+0.4
1,105,770	+	ymdC	b1046	0.14	-0.1
1,105,770	+	ymdC	b1046	0.14	+1.2
1,105,809	+	ymdC	b1046	0.16	+0.6
1,105,812	+	ymdC	b1046	0.16	-0.1
1,106,017	+	ymdC	b1046	0.31	+0.3
1,106,051	-	ymdC	b1046	0.33	+0.6
1,106,094	-	ymdC	b1046	0.36	-1.6
1,106,112	+	ymdC	b1046	0.38	-0.1
1,106,131	-	ymdC	b1046	0.39	-0.3
1,106,131	-	ymdC	b1046	0.39	+0.0
1,106,303	+	ymdC	b1046	0.51	+0.1
1,106,303	+	ymdC	b1046	0.51	-0.5
1,106,372	+	ymdC	b1046	0.56	-0.8
1,106,403	+	ymdC	b1046	0.58	-0.8
1,106,403	+	ymdC	b1046	0.58	-0.4
1,106,468	-	ymdC	b1046	0.63	-1.6
1,106,468	-	ymdC	b1046	0.63	-2.4
1,106,468	-	ymdC	b1046	0.63	+3.7
1,106,468	-	ymdC	b1046	0.63	+1.0
1,106,474	+	ymdC	b1046	0.63	+0.1
1,106,480	-	ymdC	b1046	0.63	-0.4
1,106,547	+	ymdC	b1046	0.68	-0.3
1,106,554	+	ymdC	b1046	0.69	-0.9