Experiment: P. putida Sci Big MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5007 and PP_5008 are separated by 10 nucleotides PP_5008 and PP_5009 are separated by 180 nucleotides PP_5009 and PP_5010 are separated by 18 nucleotides PP_5010 and PP_5011 are separated by 64 nucleotides
PP_5007: PP_5007 - Polyhydroxyalkanoate granule-associated protein GA2, at 5,704,587 to 5,705,372
_5007
PP_5008: PP_5008 - Poly granule-associated protein, at 5,705,383 to 5,705,802
_5008
PP_5009: PP_5009 - conserved protein of unknown function, at 5,705,983 to 5,710,743
_5009
PP_5010: PP_5010 - conserved protein of unknown function, at 5,710,762 to 5,711,097
_5010
PP_5011: PP_5011 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 5,711,162 to 5,711,932
_5011
Position (kb) 5705
5706
5707
5708
5709
5710
5711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5705.275 kb on + strand, within PP_5007 at 5705.279 kb on - strand, within PP_5007 at 5705.280 kb on - strand, within PP_5007 at 5705.280 kb on - strand, within PP_5007 at 5705.384 kb on + strand at 5705.470 kb on - strand, within PP_5008 at 5705.703 kb on - strand, within PP_5008 at 5705.863 kb on + strand at 5705.863 kb on + strand at 5705.864 kb on - strand at 5705.895 kb on + strand at 5705.896 kb on - strand at 5705.896 kb on - strand at 5705.916 kb on + strand at 5705.916 kb on + strand at 5705.916 kb on + strand at 5705.916 kb on + strand at 5705.916 kb on + strand at 5705.916 kb on + strand at 5705.917 kb on - strand at 5705.917 kb on - strand at 5705.917 kb on - strand at 5705.917 kb on - strand at 5705.917 kb on - strand at 5705.917 kb on - strand at 5705.918 kb on + strand at 5705.918 kb on + strand at 5705.918 kb on + strand at 5705.919 kb on - strand at 5705.919 kb on - strand at 5705.920 kb on + strand at 5705.920 kb on + strand at 5705.920 kb on + strand at 5705.920 kb on + strand at 5705.993 kb on + strand at 5706.071 kb on + strand at 5706.257 kb on + strand at 5706.257 kb on + strand at 5706.258 kb on - strand at 5706.258 kb on - strand at 5706.382 kb on - strand at 5706.401 kb on + strand at 5706.402 kb on - strand at 5706.556 kb on + strand, within PP_5009 at 5706.556 kb on + strand, within PP_5009 at 5706.556 kb on + strand, within PP_5009 at 5706.557 kb on - strand, within PP_5009 at 5706.602 kb on + strand, within PP_5009 at 5706.602 kb on + strand, within PP_5009 at 5706.656 kb on + strand, within PP_5009 at 5706.656 kb on + strand, within PP_5009 at 5706.656 kb on + strand, within PP_5009 at 5706.657 kb on - strand, within PP_5009 at 5706.657 kb on - strand, within PP_5009 at 5706.657 kb on - strand, within PP_5009 at 5706.657 kb on - strand, within PP_5009 at 5706.657 kb on - strand, within PP_5009 at 5706.657 kb on - strand, within PP_5009 at 5706.771 kb on - strand, within PP_5009 at 5706.941 kb on + strand, within PP_5009 at 5706.941 kb on + strand, within PP_5009 at 5706.942 kb on - strand, within PP_5009 at 5706.942 kb on - strand, within PP_5009 at 5706.959 kb on - strand, within PP_5009 at 5706.959 kb on - strand, within PP_5009 at 5707.051 kb on + strand, within PP_5009 at 5707.129 kb on - strand, within PP_5009 at 5707.139 kb on - strand, within PP_5009 at 5707.193 kb on + strand, within PP_5009 at 5707.194 kb on - strand, within PP_5009 at 5707.194 kb on - strand, within PP_5009 at 5707.194 kb on - strand, within PP_5009 at 5707.433 kb on - strand, within PP_5009 at 5707.433 kb on - strand, within PP_5009 at 5707.442 kb on - strand, within PP_5009 at 5707.442 kb on - strand, within PP_5009 at 5707.513 kb on + strand, within PP_5009 at 5707.744 kb on + strand, within PP_5009 at 5707.745 kb on - strand, within PP_5009 at 5707.745 kb on - strand, within PP_5009 at 5707.829 kb on + strand, within PP_5009 at 5707.829 kb on + strand, within PP_5009 at 5707.829 kb on + strand, within PP_5009 at 5707.829 kb on + strand, within PP_5009 at 5707.830 kb on - strand, within PP_5009 at 5707.830 kb on - strand, within PP_5009 at 5707.864 kb on + strand, within PP_5009 at 5707.909 kb on - strand, within PP_5009 at 5707.946 kb on + strand, within PP_5009 at 5708.055 kb on - strand, within PP_5009 at 5708.055 kb on - strand, within PP_5009 at 5708.264 kb on + strand, within PP_5009 at 5708.265 kb on - strand, within PP_5009 at 5708.265 kb on - strand, within PP_5009 at 5708.340 kb on + strand, within PP_5009 at 5708.460 kb on - strand, within PP_5009 at 5708.460 kb on - strand, within PP_5009 at 5708.590 kb on + strand, within PP_5009 at 5708.590 kb on + strand, within PP_5009 at 5708.591 kb on - strand, within PP_5009 at 5708.591 kb on - strand, within PP_5009 at 5708.591 kb on - strand, within PP_5009 at 5708.591 kb on - strand, within PP_5009 at 5708.591 kb on - strand, within PP_5009 at 5708.591 kb on - strand, within PP_5009 at 5708.611 kb on + strand, within PP_5009 at 5708.611 kb on + strand, within PP_5009 at 5708.612 kb on - strand, within PP_5009 at 5708.612 kb on - strand, within PP_5009 at 5708.612 kb on - strand, within PP_5009 at 5708.612 kb on - strand, within PP_5009 at 5708.635 kb on + strand, within PP_5009 at 5708.636 kb on - strand at 5708.636 kb on - strand, within PP_5009 at 5708.636 kb on - strand, within PP_5009 at 5708.636 kb on - strand, within PP_5009 at 5708.910 kb on + strand, within PP_5009 at 5708.959 kb on + strand, within PP_5009 at 5708.960 kb on - strand, within PP_5009 at 5708.960 kb on - strand, within PP_5009 at 5708.960 kb on - strand, within PP_5009 at 5708.981 kb on - strand, within PP_5009 at 5708.981 kb on - strand, within PP_5009 at 5709.152 kb on + strand, within PP_5009 at 5709.152 kb on + strand, within PP_5009 at 5709.152 kb on + strand, within PP_5009 at 5709.230 kb on - strand, within PP_5009 at 5709.350 kb on + strand, within PP_5009 at 5709.350 kb on + strand, within PP_5009 at 5709.358 kb on + strand, within PP_5009 at 5709.358 kb on + strand, within PP_5009 at 5709.358 kb on + strand, within PP_5009 at 5709.358 kb on + strand, within PP_5009 at 5709.358 kb on + strand, within PP_5009 at 5709.359 kb on - strand, within PP_5009 at 5709.359 kb on - strand, within PP_5009 at 5709.359 kb on - strand, within PP_5009 at 5709.359 kb on - strand, within PP_5009 at 5709.497 kb on + strand, within PP_5009 at 5709.568 kb on + strand, within PP_5009 at 5709.665 kb on + strand, within PP_5009 at 5709.666 kb on - strand, within PP_5009 at 5709.733 kb on - strand, within PP_5009 at 5709.772 kb on + strand, within PP_5009 at 5709.772 kb on + strand, within PP_5009 at 5709.772 kb on + strand, within PP_5009 at 5709.773 kb on - strand, within PP_5009 at 5709.773 kb on - strand, within PP_5009 at 5709.823 kb on + strand, within PP_5009 at 5709.824 kb on - strand, within PP_5009 at 5709.824 kb on - strand, within PP_5009 at 5709.827 kb on + strand, within PP_5009 at 5709.827 kb on + strand, within PP_5009 at 5709.827 kb on + strand, within PP_5009 at 5709.828 kb on - strand, within PP_5009 at 5710.463 kb on + strand at 5710.464 kb on - strand at 5710.464 kb on - strand at 5710.481 kb on - strand at 5710.481 kb on - strand at 5710.616 kb on + strand at 5710.616 kb on + strand at 5710.616 kb on + strand at 5710.617 kb on - strand at 5710.943 kb on + strand, within PP_5010 at 5711.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida Sci Big MOI 0.1 remove 5,705,275 + PP_5007 0.88 +0.2 5,705,279 - PP_5007 0.88 -1.3 5,705,280 - PP_5007 0.88 +0.4 5,705,280 - PP_5007 0.88 -0.1 5,705,384 + +1.8 5,705,470 - PP_5008 0.21 +0.8 5,705,703 - PP_5008 0.76 -2.2 5,705,863 + -1.4 5,705,863 + -1.4 5,705,864 - -0.5 5,705,895 + -0.9 5,705,896 - -0.8 5,705,896 - -2.5 5,705,916 + +0.8 5,705,916 + -1.0 5,705,916 + +0.5 5,705,916 + +0.2 5,705,916 + +1.3 5,705,916 + -0.5 5,705,917 - -1.4 5,705,917 - +0.4 5,705,917 - +1.0 5,705,917 - -1.8 5,705,917 - -0.1 5,705,917 - +0.5 5,705,918 + -2.8 5,705,918 + +0.5 5,705,918 + +0.4 5,705,919 - +1.6 5,705,919 - -1.6 5,705,920 + +0.6 5,705,920 + -0.2 5,705,920 + -2.8 5,705,920 + -1.1 5,705,993 + -2.8 5,706,071 + -1.5 5,706,257 + -0.8 5,706,257 + -2.3 5,706,258 - -2.2 5,706,258 - -2.8 5,706,382 - +0.8 5,706,401 + +1.2 5,706,402 - -1.0 5,706,556 + PP_5009 0.12 -0.5 5,706,556 + PP_5009 0.12 -0.6 5,706,556 + PP_5009 0.12 -0.6 5,706,557 - PP_5009 0.12 +0.5 5,706,602 + PP_5009 0.13 +0.1 5,706,602 + PP_5009 0.13 -0.6 5,706,656 + PP_5009 0.14 +0.2 5,706,656 + PP_5009 0.14 -2.5 5,706,656 + PP_5009 0.14 -0.1 5,706,657 - PP_5009 0.14 +0.1 5,706,657 - PP_5009 0.14 -1.4 5,706,657 - PP_5009 0.14 -0.8 5,706,657 - PP_5009 0.14 -1.7 5,706,657 - PP_5009 0.14 -2.7 5,706,657 - PP_5009 0.14 -0.4 5,706,771 - PP_5009 0.17 -0.1 5,706,941 + PP_5009 0.20 -2.4 5,706,941 + PP_5009 0.20 +0.1 5,706,942 - PP_5009 0.20 +1.0 5,706,942 - PP_5009 0.20 +0.4 5,706,959 - PP_5009 0.20 +0.3 5,706,959 - PP_5009 0.20 +1.2 5,707,051 + PP_5009 0.22 +1.1 5,707,129 - PP_5009 0.24 +0.4 5,707,139 - PP_5009 0.24 -0.7 5,707,193 + PP_5009 0.25 -0.7 5,707,194 - PP_5009 0.25 +1.0 5,707,194 - PP_5009 0.25 -0.6 5,707,194 - PP_5009 0.25 -1.1 5,707,433 - PP_5009 0.30 -0.9 5,707,433 - PP_5009 0.30 -1.1 5,707,442 - PP_5009 0.31 -0.1 5,707,442 - PP_5009 0.31 -0.3 5,707,513 + PP_5009 0.32 -0.1 5,707,744 + PP_5009 0.37 +0.4 5,707,745 - PP_5009 0.37 -0.0 5,707,745 - PP_5009 0.37 -0.4 5,707,829 + PP_5009 0.39 -1.8 5,707,829 + PP_5009 0.39 -0.9 5,707,829 + PP_5009 0.39 +0.2 5,707,829 + PP_5009 0.39 -2.3 5,707,830 - PP_5009 0.39 -3.0 5,707,830 - PP_5009 0.39 +0.7 5,707,864 + PP_5009 0.40 +0.2 5,707,909 - PP_5009 0.40 +0.1 5,707,946 + PP_5009 0.41 -1.4 5,708,055 - PP_5009 0.44 +0.2 5,708,055 - PP_5009 0.44 -1.1 5,708,264 + PP_5009 0.48 +0.1 5,708,265 - PP_5009 0.48 -1.6 5,708,265 - PP_5009 0.48 +0.3 5,708,340 + PP_5009 0.50 +0.1 5,708,460 - PP_5009 0.52 +3.0 5,708,460 - PP_5009 0.52 +0.9 5,708,590 + PP_5009 0.55 +1.6 5,708,590 + PP_5009 0.55 -0.6 5,708,591 - PP_5009 0.55 +0.0 5,708,591 - PP_5009 0.55 -0.1 5,708,591 - PP_5009 0.55 -1.1 5,708,591 - PP_5009 0.55 -2.2 5,708,591 - PP_5009 0.55 -1.8 5,708,591 - PP_5009 0.55 -0.1 5,708,611 + PP_5009 0.55 -2.4 5,708,611 + PP_5009 0.55 +0.8 5,708,612 - PP_5009 0.55 +1.9 5,708,612 - PP_5009 0.55 +1.8 5,708,612 - PP_5009 0.55 +1.4 5,708,612 - PP_5009 0.55 -3.8 5,708,635 + PP_5009 0.56 -0.5 5,708,636 - +2.1 5,708,636 - PP_5009 0.56 +0.8 5,708,636 - PP_5009 0.56 +0.6 5,708,636 - PP_5009 0.56 -0.9 5,708,910 + PP_5009 0.61 +0.6 5,708,959 + PP_5009 0.63 -2.0 5,708,960 - PP_5009 0.63 -1.6 5,708,960 - PP_5009 0.63 -0.7 5,708,960 - PP_5009 0.63 -0.7 5,708,981 - PP_5009 0.63 -2.1 5,708,981 - PP_5009 0.63 -1.0 5,709,152 + PP_5009 0.67 -0.0 5,709,152 + PP_5009 0.67 -0.4 5,709,152 + PP_5009 0.67 -0.4 5,709,230 - PP_5009 0.68 +1.8 5,709,350 + PP_5009 0.71 -1.9 5,709,350 + PP_5009 0.71 -0.5 5,709,358 + PP_5009 0.71 -1.3 5,709,358 + PP_5009 0.71 -0.8 5,709,358 + PP_5009 0.71 +1.5 5,709,358 + PP_5009 0.71 -0.9 5,709,358 + PP_5009 0.71 -2.0 5,709,359 - PP_5009 0.71 -1.4 5,709,359 - PP_5009 0.71 -0.3 5,709,359 - PP_5009 0.71 +0.8 5,709,359 - PP_5009 0.71 +0.3 5,709,497 + PP_5009 0.74 +0.3 5,709,568 + PP_5009 0.75 -1.7 5,709,665 + PP_5009 0.77 -0.1 5,709,666 - PP_5009 0.77 +0.7 5,709,733 - PP_5009 0.79 +0.0 5,709,772 + PP_5009 0.80 -1.5 5,709,772 + PP_5009 0.80 +0.0 5,709,772 + PP_5009 0.80 +0.1 5,709,773 - PP_5009 0.80 -0.2 5,709,773 - PP_5009 0.80 +1.3 5,709,823 + PP_5009 0.81 +0.1 5,709,824 - PP_5009 0.81 +0.7 5,709,824 - PP_5009 0.81 +0.1 5,709,827 + PP_5009 0.81 -1.1 5,709,827 + PP_5009 0.81 -1.2 5,709,827 + PP_5009 0.81 +1.4 5,709,828 - PP_5009 0.81 -1.4 5,710,463 + -0.0 5,710,464 - -1.4 5,710,464 - -0.9 5,710,481 - -1.8 5,710,481 - +1.5 5,710,616 + -1.9 5,710,616 + +1.7 5,710,616 + -1.2 5,710,617 - -2.8 5,710,943 + PP_5010 0.54 -0.2 5,711,064 - -1.3
Or see this region's nucleotide sequence