Experiment: P. putida PUT10 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5017 and PP_5018 overlap by 4 nucleotides PP_5018 and PP_5019 overlap by 4 nucleotides PP_5019 and PP_5020 are separated by 101 nucleotides
PP_5017: PP_5017 - Sec-independent protein translocase protein TatB, at 5,715,334 to 5,715,711
_5017
PP_5018: PP_5018 - sec-independent protein translocase protein, at 5,715,708 to 5,716,496
_5018
PP_5019: PP_5019 - Ribosomal RNA small subunit methyltransferase E, at 5,716,493 to 5,717,200
_5019
PP_5020: PP_5020 - putative methyl-accepting chemotaxis protein, at 5,717,302 to 5,719,218
_5020
Position (kb) 5716
5717
5718 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5715.564 kb on + strand, within PP_5017 at 5715.564 kb on + strand at 5716.821 kb on - strand, within PP_5019 at 5717.263 kb on + strand at 5717.263 kb on + strand at 5717.263 kb on + strand at 5717.264 kb on - strand at 5717.264 kb on - strand at 5717.269 kb on + strand at 5717.269 kb on + strand at 5717.270 kb on - strand at 5717.305 kb on + strand at 5717.305 kb on + strand at 5717.305 kb on + strand at 5717.305 kb on + strand at 5717.306 kb on - strand at 5717.306 kb on - strand at 5717.306 kb on - strand at 5717.397 kb on + strand at 5717.476 kb on + strand at 5717.476 kb on + strand at 5717.476 kb on + strand at 5717.476 kb on + strand at 5717.477 kb on - strand at 5717.477 kb on - strand at 5717.477 kb on - strand at 5717.509 kb on + strand, within PP_5020 at 5717.509 kb on + strand, within PP_5020 at 5717.510 kb on - strand, within PP_5020 at 5717.510 kb on - strand, within PP_5020 at 5717.510 kb on - strand, within PP_5020 at 5717.510 kb on - strand, within PP_5020 at 5717.657 kb on - strand, within PP_5020 at 5717.717 kb on + strand, within PP_5020 at 5717.769 kb on + strand, within PP_5020 at 5717.860 kb on + strand, within PP_5020 at 5717.866 kb on + strand, within PP_5020 at 5717.866 kb on + strand, within PP_5020 at 5717.866 kb on + strand, within PP_5020 at 5717.866 kb on + strand, within PP_5020 at 5717.867 kb on - strand, within PP_5020
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 0.1 remove 5,715,564 + PP_5017 0.61 -0.4 5,715,564 + +1.8 5,716,821 - PP_5019 0.46 +4.0 5,717,263 + +0.3 5,717,263 + -0.2 5,717,263 + -0.5 5,717,264 - -0.4 5,717,264 - -0.5 5,717,269 + +0.3 5,717,269 + -0.4 5,717,270 - -0.9 5,717,305 + -0.3 5,717,305 + +0.0 5,717,305 + -0.9 5,717,305 + +0.3 5,717,306 - +0.8 5,717,306 - +0.3 5,717,306 - +1.6 5,717,397 + -1.1 5,717,476 + -0.2 5,717,476 + +0.2 5,717,476 + +0.8 5,717,476 + -0.6 5,717,477 - +0.3 5,717,477 - +0.7 5,717,477 - -0.1 5,717,509 + PP_5020 0.11 -1.3 5,717,509 + PP_5020 0.11 -1.5 5,717,510 - PP_5020 0.11 +0.2 5,717,510 - PP_5020 0.11 -0.1 5,717,510 - PP_5020 0.11 +0.6 5,717,510 - PP_5020 0.11 -0.1 5,717,657 - PP_5020 0.19 +0.2 5,717,717 + PP_5020 0.22 -0.1 5,717,769 + PP_5020 0.24 +0.3 5,717,860 + PP_5020 0.29 +0.2 5,717,866 + PP_5020 0.29 -0.2 5,717,866 + PP_5020 0.29 -0.7 5,717,866 + PP_5020 0.29 -0.6 5,717,866 + PP_5020 0.29 +0.7 5,717,867 - PP_5020 0.29 -1.3
Or see this region's nucleotide sequence