Experiment: P. putida PUT10 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2244 and PP_2245 are separated by 124 nucleotides PP_2245 and PP_2246 are separated by 114 nucleotides PP_2246 and PP_2247 are separated by 12 nucleotides PP_2247 and PP_2248 are separated by 112 nucleotides
PP_2244: PP_2244 - putative transmembrane protein TauE like, at 2,560,645 to 2,561,430
_2244
PP_2245: PP_2245 - Transcriptional regulator, Cro/CI family, at 2,561,555 to 2,562,148
_2245
PP_2246: PP_2246 - catabolic D-arginine dehydrogenase, FAD-dependent, at 2,562,263 to 2,563,399
_2246
PP_2247: PP_2247 - putative Endoribonuclease, at 2,563,412 to 2,563,789
_2247
PP_2248: PP_2248 - putative transporter, at 2,563,902 to 2,564,966
_2248
Position (kb)
2562
2563
2564 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2561.279 kb on + strand, within PP_2244 at 2561.280 kb on - strand, within PP_2244 at 2561.280 kb on - strand, within PP_2244 at 2561.370 kb on + strand at 2561.422 kb on + strand at 2561.422 kb on + strand at 2561.422 kb on + strand at 2561.422 kb on + strand at 2561.423 kb on - strand at 2561.423 kb on - strand at 2561.423 kb on - strand at 2561.430 kb on + strand at 2561.430 kb on + strand at 2561.431 kb on - strand at 2561.431 kb on - strand at 2561.431 kb on - strand at 2561.431 kb on - strand at 2561.435 kb on + strand at 2561.436 kb on - strand at 2561.436 kb on - strand at 2561.480 kb on - strand at 2561.480 kb on - strand at 2561.481 kb on + strand at 2561.494 kb on - strand at 2561.573 kb on + strand at 2561.574 kb on - strand at 2561.574 kb on - strand at 2561.574 kb on - strand at 2561.616 kb on + strand, within PP_2245 at 2561.616 kb on + strand, within PP_2245 at 2561.616 kb on + strand, within PP_2245 at 2561.616 kb on + strand, within PP_2245 at 2561.616 kb on + strand, within PP_2245 at 2561.617 kb on - strand, within PP_2245 at 2561.617 kb on - strand, within PP_2245 at 2561.617 kb on - strand, within PP_2245 at 2561.617 kb on - strand, within PP_2245 at 2561.644 kb on - strand, within PP_2245 at 2561.644 kb on - strand, within PP_2245 at 2561.838 kb on + strand, within PP_2245 at 2561.839 kb on - strand, within PP_2245 at 2561.839 kb on - strand, within PP_2245 at 2561.844 kb on + strand, within PP_2245 at 2561.844 kb on + strand, within PP_2245 at 2561.859 kb on + strand, within PP_2245 at 2561.988 kb on + strand, within PP_2245 at 2562.186 kb on - strand at 2562.186 kb on - strand at 2562.275 kb on + strand at 2562.275 kb on + strand at 2562.423 kb on - strand, within PP_2246 at 2562.423 kb on - strand, within PP_2246 at 2562.470 kb on + strand, within PP_2246 at 2562.470 kb on + strand, within PP_2246 at 2562.470 kb on + strand, within PP_2246 at 2562.470 kb on + strand, within PP_2246 at 2562.471 kb on - strand at 2562.531 kb on - strand, within PP_2246 at 2562.531 kb on - strand, within PP_2246 at 2562.531 kb on - strand, within PP_2246 at 2562.531 kb on - strand, within PP_2246 at 2562.531 kb on - strand, within PP_2246 at 2562.705 kb on + strand, within PP_2246 at 2562.706 kb on - strand, within PP_2246 at 2562.706 kb on - strand, within PP_2246 at 2562.791 kb on + strand, within PP_2246 at 2562.974 kb on - strand, within PP_2246 at 2563.014 kb on - strand, within PP_2246 at 2563.115 kb on - strand, within PP_2246 at 2563.115 kb on - strand, within PP_2246 at 2563.118 kb on + strand, within PP_2246 at 2563.118 kb on + strand, within PP_2246 at 2563.119 kb on - strand, within PP_2246 at 2563.679 kb on + strand, within PP_2247 at 2563.679 kb on + strand, within PP_2247 at 2563.679 kb on + strand, within PP_2247 at 2563.680 kb on - strand, within PP_2247 at 2563.680 kb on - strand, within PP_2247 at 2563.680 kb on - strand, within PP_2247 at 2563.809 kb on - strand at 2564.370 kb on + strand, within PP_2248
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 0.1 remove 2,561,279 + PP_2244 0.81 -1.6 2,561,280 - PP_2244 0.81 +1.1 2,561,280 - PP_2244 0.81 +1.3 2,561,370 + -0.3 2,561,422 + +0.5 2,561,422 + -0.3 2,561,422 + -0.2 2,561,422 + -0.4 2,561,423 - +1.6 2,561,423 - +0.8 2,561,423 - -0.9 2,561,430 + -1.0 2,561,430 + +0.0 2,561,431 - +0.4 2,561,431 - +1.0 2,561,431 - +0.4 2,561,431 - +0.4 2,561,435 + +0.3 2,561,436 - -1.0 2,561,436 - +0.1 2,561,480 - +0.6 2,561,480 - -2.1 2,561,481 + +0.0 2,561,494 - +0.0 2,561,573 + +0.1 2,561,574 - -1.7 2,561,574 - -3.5 2,561,574 - +0.2 2,561,616 + PP_2245 0.10 +0.2 2,561,616 + PP_2245 0.10 +0.5 2,561,616 + PP_2245 0.10 -0.1 2,561,616 + PP_2245 0.10 -0.1 2,561,616 + PP_2245 0.10 -1.9 2,561,617 - PP_2245 0.10 -0.6 2,561,617 - PP_2245 0.10 +0.3 2,561,617 - PP_2245 0.10 +0.1 2,561,617 - PP_2245 0.10 +0.6 2,561,644 - PP_2245 0.15 -0.6 2,561,644 - PP_2245 0.15 -0.4 2,561,838 + PP_2245 0.48 +0.5 2,561,839 - PP_2245 0.48 -0.2 2,561,839 - PP_2245 0.48 -0.2 2,561,844 + PP_2245 0.49 +0.9 2,561,844 + PP_2245 0.49 +0.7 2,561,859 + PP_2245 0.51 +0.7 2,561,988 + PP_2245 0.73 -0.5 2,562,186 - -0.2 2,562,186 - +0.6 2,562,275 + -0.8 2,562,275 + +0.7 2,562,423 - PP_2246 0.14 -0.9 2,562,423 - PP_2246 0.14 +0.6 2,562,470 + PP_2246 0.18 -0.2 2,562,470 + PP_2246 0.18 +1.4 2,562,470 + PP_2246 0.18 +0.1 2,562,470 + PP_2246 0.18 +0.3 2,562,471 - +0.7 2,562,531 - PP_2246 0.24 +0.9 2,562,531 - PP_2246 0.24 -0.3 2,562,531 - PP_2246 0.24 +0.8 2,562,531 - PP_2246 0.24 -2.5 2,562,531 - PP_2246 0.24 +0.6 2,562,705 + PP_2246 0.39 -0.3 2,562,706 - PP_2246 0.39 -0.7 2,562,706 - PP_2246 0.39 +0.5 2,562,791 + PP_2246 0.46 +0.5 2,562,974 - PP_2246 0.63 +0.0 2,563,014 - PP_2246 0.66 -0.3 2,563,115 - PP_2246 0.75 -1.0 2,563,115 - PP_2246 0.75 -1.6 2,563,118 + PP_2246 0.75 -0.0 2,563,118 + PP_2246 0.75 -0.3 2,563,119 - PP_2246 0.75 -0.3 2,563,679 + PP_2247 0.71 -1.9 2,563,679 + PP_2247 0.71 -0.0 2,563,679 + PP_2247 0.71 -0.4 2,563,680 - PP_2247 0.71 +0.8 2,563,680 - PP_2247 0.71 +0.8 2,563,680 - PP_2247 0.71 +0.7 2,563,809 - +0.3 2,564,370 + PP_2248 0.44 -0.2
Or see this region's nucleotide sequence