Strain Fitness in Pseudomonas putida KT2440 around PP_0229

Experiment: P. putida PUT10 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0228 and PP_0229 are separated by 269 nucleotidesPP_0229 and PP_0230 are separated by 62 nucleotidesPP_0230 and PP_0231 are separated by 48 nucleotides PP_0228: PP_0228 - putative serine acetyltransferase, at 281,348 to 282,280 _0228 PP_0229: PP_0229 - choline/carnitine/betaine transporter, at 282,550 to 284,553 _0229 PP_0230: PP_0230 - alpha-ketoglutarate-dependent sulfonate dioxygenase, at 284,616 to 285,449 _0230 PP_0231: PP_0231 - taurine ABC transporter permease subunit, at 285,498 to 286,337 _0231 Position (kb) 282 283 284 285Strain fitness (log2 ratio) -1 0 1 2 3at 281.576 kb on + strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.576 kb on + strand, within PP_0228at 281.577 kb on - strand, within PP_0228at 281.587 kb on + strand, within PP_0228at 281.816 kb on + strand, within PP_0228at 281.864 kb on + strand, within PP_0228at 281.865 kb on - strand, within PP_0228at 281.981 kb on - strand, within PP_0228at 282.091 kb on + strand, within PP_0228at 282.092 kb on - strand, within PP_0228at 282.137 kb on + strand, within PP_0228at 282.137 kb on + strand, within PP_0228at 282.137 kb on + strand, within PP_0228at 282.138 kb on - strand, within PP_0228at 282.163 kb on + strand, within PP_0228at 282.163 kb on + strand, within PP_0228at 282.164 kb on - strand, within PP_0228at 282.164 kb on - strand, within PP_0228at 282.166 kb on + strand, within PP_0228at 282.167 kb on - strand, within PP_0228at 282.167 kb on - strand, within PP_0228at 282.238 kb on + strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.238 kb on + strandat 282.239 kb on - strandat 282.239 kb on - strandat 282.342 kb on + strandat 282.342 kb on + strandat 282.342 kb on + strandat 282.342 kb on + strandat 282.343 kb on - strandat 282.343 kb on - strandat 282.350 kb on + strandat 282.350 kb on + strandat 282.351 kb on - strandat 282.351 kb on - strandat 282.611 kb on - strandat 282.647 kb on + strandat 282.647 kb on + strandat 282.647 kb on + strandat 282.648 kb on - strandat 282.724 kb on + strandat 282.724 kb on + strandat 282.725 kb on - strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.727 kb on + strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 282.728 kb on - strandat 283.042 kb on + strand, within PP_0229at 283.064 kb on + strand, within PP_0229at 283.064 kb on + strand, within PP_0229at 283.222 kb on + strand, within PP_0229at 283.223 kb on - strand, within PP_0229at 283.223 kb on - strand, within PP_0229at 283.439 kb on - strand, within PP_0229at 283.439 kb on - strand, within PP_0229at 283.474 kb on + strand, within PP_0229at 283.474 kb on + strand, within PP_0229at 283.475 kb on - strand, within PP_0229at 283.475 kb on - strand, within PP_0229at 283.475 kb on - strand, within PP_0229at 283.475 kb on - strand, within PP_0229at 283.475 kb on - strand, within PP_0229at 283.475 kb on - strand, within PP_0229at 283.475 kb on - strand, within PP_0229at 283.475 kb on - strand, within PP_0229at 283.480 kb on + strand, within PP_0229at 283.481 kb on - strand, within PP_0229at 283.481 kb on - strand, within PP_0229at 283.689 kb on - strand, within PP_0229at 283.689 kb on - strand, within PP_0229at 283.747 kb on + strand, within PP_0229at 283.747 kb on + strand, within PP_0229at 283.747 kb on + strand, within PP_0229at 283.765 kb on + strand, within PP_0229at 283.766 kb on - strand, within PP_0229at 283.912 kb on - strand, within PP_0229at 284.059 kb on + strand, within PP_0229at 284.059 kb on + strand, within PP_0229at 284.060 kb on - strand, within PP_0229at 284.060 kb on - strand, within PP_0229at 284.261 kb on + strand, within PP_0229at 284.283 kb on + strand, within PP_0229at 284.284 kb on - strand, within PP_0229at 284.338 kb on + strand, within PP_0229at 284.339 kb on - strand, within PP_0229at 284.339 kb on - strand, within PP_0229at 284.359 kb on + strandat 284.360 kb on - strandat 284.360 kb on - strandat 284.461 kb on + strandat 284.461 kb on + strandat 284.461 kb on + strandat 284.461 kb on + strandat 284.462 kb on - strandat 284.462 kb on - strandat 284.462 kb on - strandat 284.533 kb on + strandat 284.533 kb on + strandat 284.533 kb on + strandat 285.092 kb on - strand, within PP_0230at 285.377 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 0.1
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281,576 + PP_0228 0.24 -0.1
281,576 + PP_0228 0.24 -1.1
281,576 + PP_0228 0.24 +0.3
281,576 + PP_0228 0.24 -0.0
281,577 - PP_0228 0.25 -0.2
281,587 + PP_0228 0.26 +0.4
281,816 + PP_0228 0.50 -0.1
281,864 + PP_0228 0.55 +0.4
281,865 - PP_0228 0.55 +0.6
281,981 - PP_0228 0.68 +3.4
282,091 + PP_0228 0.80 -0.2
282,092 - PP_0228 0.80 -0.4
282,137 + PP_0228 0.85 +0.5
282,137 + PP_0228 0.85 -0.3
282,137 + PP_0228 0.85 -0.6
282,138 - PP_0228 0.85 -0.7
282,163 + PP_0228 0.87 +0.0
282,163 + PP_0228 0.87 -0.5
282,164 - PP_0228 0.87 +0.3
282,164 - PP_0228 0.87 +0.7
282,166 + PP_0228 0.88 -1.0
282,167 - PP_0228 0.88 +0.0
282,167 - PP_0228 0.88 +0.9
282,238 + -0.3
282,238 + +0.7
282,238 + +0.1
282,238 + -0.0
282,238 + -0.8
282,239 - +0.3
282,239 - +0.0
282,342 + -1.0
282,342 + +0.6
282,342 + +0.6
282,342 + -0.3
282,343 - +0.2
282,343 - -1.0
282,350 + -0.3
282,350 + +1.7
282,351 - +0.7
282,351 - -0.3
282,611 - -0.0
282,647 + -0.6
282,647 + -0.3
282,647 + -0.0
282,648 - +0.4
282,724 + -0.0
282,724 + +2.8
282,725 - -0.3
282,727 + +2.0
282,727 + -1.5
282,727 + +0.9
282,727 + +0.8
282,727 + +1.1
282,727 + +0.6
282,728 - -1.3
282,728 - +1.1
282,728 - +0.2
282,728 - +0.1
282,728 - +0.8
282,728 - -1.0
282,728 - -1.5
282,728 - +0.4
282,728 - +0.5
282,728 - +0.5
283,042 + PP_0229 0.25 -0.0
283,064 + PP_0229 0.26 -0.8
283,064 + PP_0229 0.26 +0.6
283,222 + PP_0229 0.34 -0.3
283,223 - PP_0229 0.34 -1.2
283,223 - PP_0229 0.34 +0.1
283,439 - PP_0229 0.44 -0.2
283,439 - PP_0229 0.44 +0.6
283,474 + PP_0229 0.46 +0.4
283,474 + PP_0229 0.46 -0.4
283,475 - PP_0229 0.46 -0.2
283,475 - PP_0229 0.46 +0.7
283,475 - PP_0229 0.46 -0.2
283,475 - PP_0229 0.46 -0.4
283,475 - PP_0229 0.46 +0.2
283,475 - PP_0229 0.46 +0.3
283,475 - PP_0229 0.46 -1.4
283,475 - PP_0229 0.46 -0.2
283,480 + PP_0229 0.46 +1.0
283,481 - PP_0229 0.46 +0.2
283,481 - PP_0229 0.46 +1.6
283,689 - PP_0229 0.57 +0.0
283,689 - PP_0229 0.57 +0.1
283,747 + PP_0229 0.60 -0.3
283,747 + PP_0229 0.60 -0.6
283,747 + PP_0229 0.60 +0.0
283,765 + PP_0229 0.61 +0.8
283,766 - PP_0229 0.61 -0.8
283,912 - PP_0229 0.68 -0.5
284,059 + PP_0229 0.75 +0.6
284,059 + PP_0229 0.75 -0.2
284,060 - PP_0229 0.75 -0.1
284,060 - PP_0229 0.75 +0.1
284,261 + PP_0229 0.85 +0.8
284,283 + PP_0229 0.86 -0.3
284,284 - PP_0229 0.87 +0.6
284,338 + PP_0229 0.89 +0.6
284,339 - PP_0229 0.89 +0.1
284,339 - PP_0229 0.89 +0.3
284,359 + +0.6
284,360 - -1.4
284,360 - +1.1
284,461 + +0.2
284,461 + -1.0
284,461 + -0.6
284,461 + +0.3
284,462 - +0.3
284,462 - +0.3
284,462 - -1.0
284,533 + -0.3
284,533 + +0.0
284,533 + +1.8
285,092 - PP_0230 0.57 -0.3
285,377 + +0.1

Or see this region's nucleotide sequence