Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5109 and PP_5110 overlap by 4 nucleotides PP_5110 and PP_5111 overlap by 4 nucleotides PP_5111 and PP_5112 are separated by 231 nucleotides
PP_5109: PP_5109 - membrane component of the ABC transporter FtsEX involved in cellular division, at 5,828,963 to 5,829,988
_5109
PP_5110: PP_5110 - cytokinetic ring ABC transporter-like subunit - ATP-binding subunit, at 5,829,985 to 5,830,662
_5110
PP_5111: PP_5111 - Signal Recognition Particle protein translocation receptor GTPase, at 5,830,659 to 5,832,143
_5111
PP_5112: PP_5112 - putative processin peptidase, at 5,832,375 to 5,833,730
_5112
Position (kb) 5830
5831
5832
5833 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5829.675 kb on + strand, within PP_5109 at 5829.973 kb on + strand at 5829.974 kb on - strand at 5829.974 kb on - strand at 5830.088 kb on - strand, within PP_5110 at 5830.283 kb on - strand, within PP_5110 at 5832.217 kb on - strand at 5832.217 kb on - strand at 5832.217 kb on - strand at 5832.256 kb on - strand at 5832.365 kb on + strand at 5832.365 kb on + strand at 5832.374 kb on + strand at 5832.375 kb on - strand at 5832.375 kb on - strand at 5832.375 kb on - strand at 5832.385 kb on + strand at 5832.546 kb on + strand, within PP_5112 at 5832.546 kb on + strand, within PP_5112 at 5832.547 kb on - strand, within PP_5112 at 5832.564 kb on + strand, within PP_5112 at 5832.565 kb on - strand, within PP_5112 at 5832.705 kb on + strand, within PP_5112 at 5832.705 kb on + strand, within PP_5112 at 5832.705 kb on + strand, within PP_5112 at 5832.706 kb on - strand, within PP_5112 at 5832.714 kb on + strand, within PP_5112 at 5832.714 kb on + strand, within PP_5112 at 5832.717 kb on + strand, within PP_5112 at 5832.717 kb on + strand, within PP_5112 at 5832.717 kb on + strand, within PP_5112 at 5832.718 kb on - strand, within PP_5112 at 5832.718 kb on - strand, within PP_5112 at 5832.984 kb on + strand, within PP_5112 at 5832.984 kb on + strand, within PP_5112 at 5832.985 kb on - strand, within PP_5112 at 5832.996 kb on + strand, within PP_5112 at 5833.071 kb on + strand, within PP_5112
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 5,829,675 + PP_5109 0.69 +0.6 5,829,973 + +0.9 5,829,974 - +0.4 5,829,974 - -0.4 5,830,088 - PP_5110 0.15 +0.1 5,830,283 - PP_5110 0.44 +1.0 5,832,217 - -0.6 5,832,217 - +1.8 5,832,217 - +0.6 5,832,256 - +0.1 5,832,365 + -0.3 5,832,365 + -0.6 5,832,374 + -0.7 5,832,375 - -1.3 5,832,375 - -1.8 5,832,375 - -3.1 5,832,385 + -0.4 5,832,546 + PP_5112 0.13 +0.1 5,832,546 + PP_5112 0.13 -0.6 5,832,547 - PP_5112 0.13 -1.6 5,832,564 + PP_5112 0.14 +0.5 5,832,565 - PP_5112 0.14 -2.1 5,832,705 + PP_5112 0.24 -0.1 5,832,705 + PP_5112 0.24 -0.4 5,832,705 + PP_5112 0.24 -0.2 5,832,706 - PP_5112 0.24 -2.9 5,832,714 + PP_5112 0.25 +2.7 5,832,714 + PP_5112 0.25 -0.4 5,832,717 + PP_5112 0.25 +0.1 5,832,717 + PP_5112 0.25 -1.0 5,832,717 + PP_5112 0.25 -0.3 5,832,718 - PP_5112 0.25 -2.1 5,832,718 - PP_5112 0.25 -2.8 5,832,984 + PP_5112 0.45 +0.4 5,832,984 + PP_5112 0.45 -0.0 5,832,985 - PP_5112 0.45 +1.1 5,832,996 + PP_5112 0.46 +0.1 5,833,071 + PP_5112 0.51 +0.6
Or see this region's nucleotide sequence