Strain Fitness in Pseudomonas putida KT2440 around PP_4946

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
5,627,658	+				-0.3
5,627,695	+				+1.5
5,627,726	+				+1.6
5,627,860	+		PP_4945	0.20	+1.2
5,627,860	+		PP_4945	0.20	-0.0
5,627,860	+		PP_4945	0.20	+0.5
5,627,860	+		PP_4945	0.20	-0.2
5,627,861	-		PP_4945	0.20	-0.2
5,627,861	-		PP_4945	0.20	-0.5
5,627,861	-		PP_4945	0.20	-0.7
5,627,861	-		PP_4945	0.20	-0.4
5,627,861	-		PP_4945	0.20	+0.2
5,627,912	-		PP_4945	0.26	-0.8
5,627,912	-		PP_4945	0.26	-1.1
5,627,915	-		PP_4945	0.26	-0.1
5,628,185	+		PP_4945	0.59	-0.3
5,628,247	+		PP_4945	0.66	+0.5
5,628,248	-		PP_4945	0.66	+0.2
5,628,292	+		PP_4945	0.71	+0.5
5,628,293	-		PP_4945	0.72	-1.2
5,628,391	+		PP_4945	0.83	+0.8
5,628,391	+		PP_4945	0.83	-0.4
5,628,391	+		PP_4945	0.83	+0.7
5,628,391	+		PP_4945	0.83	+0.5
5,628,392	-				+0.9
5,628,392	-		PP_4945	0.83	-1.3
5,628,419	+		PP_4945	0.87	+1.0
5,628,421	+		PP_4945	0.87	+0.6
5,628,523	+				+0.1
5,628,523	+				+0.3
5,628,523	+				+0.3
5,628,524	-				+1.1
5,628,558	-				-0.4
5,628,558	-				+1.3
5,628,638	+				+0.7
5,628,638	+				-0.1
5,628,638	+				+0.0
5,628,639	-				+0.4
5,628,639	-				+0.3
5,628,639	-				+0.4
5,628,765	-				+2.0
5,628,914	+		PP_4946	0.17	+0.1
5,628,914	+		PP_4946	0.17	+1.2
5,629,049	+		PP_4946	0.25	+1.2
5,629,049	+		PP_4946	0.25	+0.7
5,629,049	+		PP_4946	0.25	+1.2
5,629,101	+		PP_4946	0.28	+0.7
5,629,102	-		PP_4946	0.29	+1.1
5,629,239	-		PP_4946	0.37	+0.2
5,629,239	-		PP_4946	0.37	+0.8
5,629,555	+		PP_4946	0.56	+0.4
5,629,556	-		PP_4946	0.56	+0.9
5,629,556	-		PP_4946	0.56	-0.0
5,629,601	+		PP_4946	0.59	+1.2
5,629,643	+		PP_4946	0.62	+0.1
5,629,703	+		PP_4946	0.65	+1.1
5,629,703	+		PP_4946	0.65	+1.4
5,629,703	+				-0.5
5,629,703	+		PP_4946	0.65	+0.8
5,629,703	+		PP_4946	0.65	+0.4
5,629,703	+		PP_4946	0.65	+2.3
5,629,704	-		PP_4946	0.66	-0.1
5,629,704	-		PP_4946	0.66	+0.3
5,629,743	+		PP_4946	0.68	+0.0
5,629,744	-		PP_4946	0.68	+1.0
5,629,784	+		PP_4946	0.70	+0.9
5,629,784	+		PP_4946	0.70	+1.0
5,629,916	+		PP_4946	0.79	+1.5
5,629,916	+		PP_4946	0.79	-0.1
5,629,916	+		PP_4946	0.79	+0.7
5,629,917	-		PP_4946	0.79	+1.5
5,630,081	+		PP_4946	0.89	+0.4
5,630,081	+		PP_4946	0.89	+1.1
5,630,139	+				+0.2
5,630,188	-				+0.7
5,630,188	-				+0.8
5,630,345	+				+0.7
5,630,346	-				-0.1
5,630,414	+				+1.0
5,630,420	+				+0.5
5,630,420	+				+0.5
5,630,420	+				+0.4
5,630,437	+				+0.6
5,630,456	+				+0.3
5,630,466	-				+0.7
5,630,588	+				-1.1
5,630,588	+				+0.3
5,630,734	-				+0.4