Strain Fitness in Pseudomonas putida KT2440 around PP_1409

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
1,606,903	+		PP_1408	0.29	-0.2
1,606,977	+		PP_1408	0.37	+0.1
1,607,010	+		PP_1408	0.41	+0.8
1,607,011	-				+0.4
1,607,011	-		PP_1408	0.41	-0.9
1,607,011	-		PP_1408	0.41	-0.2
1,607,100	+		PP_1408	0.51	-0.0
1,607,100	+		PP_1408	0.51	-0.5
1,607,100	+		PP_1408	0.51	-0.5
1,607,100	+		PP_1408	0.51	-0.0
1,607,122	-		PP_1408	0.54	+0.6
1,607,181	+		PP_1408	0.60	+0.1
1,607,282	-		PP_1408	0.72	-0.4
1,607,282	-		PP_1408	0.72	-1.0
1,607,346	+		PP_1408	0.79	+0.8
1,607,346	+		PP_1408	0.79	+1.0
1,607,346	+				+1.0
1,607,347	-		PP_1408	0.79	-0.3
1,607,389	+		PP_1408	0.84	-0.2
1,607,393	+		PP_1408	0.84	-0.8
1,607,393	+		PP_1408	0.84	-0.4
1,607,394	-		PP_1408	0.84	+0.9
1,607,472	+				-0.2
1,607,485	-				-0.4
1,607,514	-				+0.1
1,607,514	-				-0.1
1,607,573	+				-1.0
1,607,573	+				+0.0
1,607,590	-				+0.0
1,607,590	-				+0.4
1,607,598	+				+0.3
1,607,661	-				-0.6
1,607,700	+				-0.3
1,607,700	+				+0.1
1,607,701	-				+0.5
1,607,701	-				-0.5
1,607,751	+				+0.4
1,607,751	+				+0.1
1,607,821	+				+1.4
1,607,821	+				-0.2
1,607,821	+				+0.6
1,607,822	-				-0.5
1,607,850	-				-0.6
1,607,850	-				-0.8
1,607,850	-				-0.2
1,607,878	+				+0.3
1,607,889	+				-0.5
1,607,889	+				-0.5
1,608,022	+		PP_1409	0.21	-0.5
1,608,023	+		PP_1409	0.21	-1.4
1,608,113	-		PP_1409	0.34	-1.0
1,608,139	+		PP_1409	0.38	+0.3
1,608,139	+		PP_1409	0.38	+0.5
1,608,139	+		PP_1409	0.38	-0.6
1,608,140	-		PP_1409	0.38	-0.2
1,608,140	-		PP_1409	0.38	-0.8
1,608,140	-		PP_1409	0.38	-1.2
1,608,140	-		PP_1409	0.38	+0.7
1,608,176	-		PP_1409	0.43	-1.3
1,608,279	+		PP_1409	0.58	+0.4
1,608,280	-		PP_1409	0.58	+0.1
1,608,373	+		PP_1409	0.72	-0.3
1,608,374	-		PP_1409	0.72	+0.5
1,608,374	-		PP_1409	0.72	-0.8
1,608,374	-		PP_1409	0.72	-0.5
1,608,374	-		PP_1409	0.72	-0.8
1,608,429	+		PP_1409	0.80	-1.0
1,608,430	-		PP_1409	0.80	-0.6
1,608,471	+		PP_1409	0.86	-0.5
1,608,532	+				-0.8
1,608,532	+				-0.6
1,608,533	-				+0.5
1,608,533	-				+0.0
1,608,533	-				-0.8
1,608,533	-				-1.0
1,608,699	+		PP_1410	0.52	-0.4
1,608,878	+				+0.5
1,608,940	+		PP_1411	0.11	-1.9
1,609,056	+		PP_1411	0.18	-0.6
1,609,056	+		PP_1411	0.18	-0.2
1,609,056	+		PP_1411	0.18	+0.4
1,609,056	+		PP_1411	0.18	-1.2
1,609,057	-		PP_1411	0.18	-2.2
1,609,057	-		PP_1411	0.18	-0.6
1,609,057	-		PP_1411	0.18	-1.6
1,609,057	-		PP_1411	0.18	-0.7
1,609,057	-		PP_1411	0.18	+0.2
1,609,057	-		PP_1411	0.18	-1.0
1,609,057	-		PP_1411	0.18	-2.2
1,609,058	+		PP_1411	0.19	-0.5
1,609,058	+		PP_1411	0.19	+0.5
1,609,059	-		PP_1411	0.19	-1.1
1,609,059	-		PP_1411	0.19	+0.6
1,609,059	-		PP_1411	0.19	+1.6
1,609,104	+		PP_1411	0.22	-0.2
1,609,252	+		PP_1411	0.32	+0.6
1,609,355	+		PP_1411	0.39	+0.9
1,609,356	-		PP_1411	0.39	-0.5
1,609,356	-		PP_1411	0.39	+1.5
1,609,375	+		PP_1411	0.40	+0.5
1,609,376	-		PP_1411	0.40	+0.3
1,609,432	+		PP_1411	0.44	-1.2
1,609,433	-		PP_1411	0.44	+1.1
1,609,562	+		PP_1411	0.53	-0.5
1,609,562	+		PP_1411	0.53	+0.2
1,609,563	-		PP_1411	0.53	-0.6
1,609,563	-		PP_1411	0.53	-0.4
1,609,563	-		PP_1411	0.53	+0.4
1,609,566	+		PP_1411	0.53	+0.8
1,609,566	+		PP_1411	0.53	-0.3
1,609,566	+		PP_1411	0.53	+0.4
1,609,567	-		PP_1411	0.53	-0.9
1,609,567	-		PP_1411	0.53	+0.4
1,609,567	-		PP_1411	0.53	+0.8