Strain Fitness in Pseudomonas putida KT2440 around PP_1406

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
1,602,575	-		PP_5469	0.35	-0.1
1,602,766	+		PP_5469	0.50	-1.4
1,602,791	-		PP_5469	0.52	+1.0
1,602,791	-		PP_5469	0.52	-0.5
1,602,791	-		PP_5469	0.52	-0.3
1,602,989	-		PP_5469	0.69	-0.6
1,602,989	-		PP_5469	0.69	-0.2
1,603,180	+				+0.4
1,603,270	-				+0.3
1,603,312	+				-1.6
1,603,312	+				-0.5
1,603,313	-				-0.6
1,603,313	-				-0.4
1,603,428	-				-2.6
1,603,569	+		PP_1406	0.17	-0.7
1,603,570	-		PP_1406	0.17	+1.2
1,603,570	-		PP_1406	0.17	-0.2
1,603,570	-		PP_1406	0.17	-0.5
1,603,570	-		PP_1406	0.17	-1.3
1,603,570	-		PP_1406	0.17	-0.5
1,603,648	-		PP_1406	0.24	-0.4
1,603,693	+		PP_1406	0.29	-0.8
1,603,912	+		PP_1406	0.51	-1.0
1,603,985	-		PP_1406	0.58	-0.5
1,603,997	-		PP_1406	0.59	-0.5
1,604,113	+		PP_1406	0.70	-0.5
1,604,113	+		PP_1406	0.70	-0.3
1,604,113	+		PP_1406	0.70	-0.6
1,604,113	+		PP_1406	0.70	+0.5
1,604,114	-		PP_1406	0.71	-0.8
1,604,116	+		PP_1406	0.71	-0.2
1,604,116	+		PP_1406	0.71	-0.7
1,604,297	-		PP_1406	0.89	-0.4
1,604,297	-		PP_1406	0.89	-0.8
1,604,313	+				+0.3
1,604,314	-				-1.1
1,604,450	+				-1.0
1,604,450	+				-1.6
1,604,450	+				-0.3
1,604,451	-				+0.4
1,604,451	-				-0.8
1,604,451	-				-0.5
1,604,451	-				+0.1
1,604,617	-				+0.8
1,604,629	-				-1.2
1,604,802	+		PP_1407	0.15	-0.0
1,604,802	+		PP_1407	0.15	-1.5
1,604,814	-		PP_1407	0.16	+0.4
1,604,841	+		PP_1407	0.17	+0.4
1,604,842	-		PP_1407	0.17	-3.0
1,604,899	+		PP_1407	0.21	-1.3
1,604,916	+		PP_1407	0.22	+0.8
1,604,916	+		PP_1407	0.22	+0.4
1,605,001	+		PP_1407	0.27	+0.9
1,605,001	+		PP_1407	0.27	-1.0
1,605,001	+		PP_1407	0.27	-1.1
1,605,002	-		PP_1407	0.27	+0.5
1,605,002	-		PP_1407	0.27	-0.6
1,605,002	-		PP_1407	0.27	-0.5
1,605,010	+		PP_1407	0.27	+0.3
1,605,076	-		PP_1407	0.31	-1.9
1,605,076	-		PP_1407	0.31	+0.5
1,605,271	-		PP_1407	0.43	+0.2
1,605,271	-		PP_1407	0.43	-0.1
1,605,409	+		PP_1407	0.51	-0.5
1,605,409	+		PP_1407	0.51	+0.0