Strain Fitness in Pseudomonas putida KT2440 around PP_0065

Experiment: P. putida PUT10 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0063 and PP_0064 are separated by 97 nucleotidesPP_0064 and PP_0065 are separated by 11 nucleotidesPP_0065 and PP_0066 are separated by 23 nucleotides PP_0063: PP_0063 - putative Lipid A biosynthesis lauroyl acyltransferase, at 73,525 to 74,412 _0063 PP_0064: PP_0064 - conserved protein of unknown function, at 74,510 to 74,824 _0064 PP_0065: PP_0065 - NAD-binding component of TrK potassium transporter, at 74,836 to 76,209 _0065 PP_0066: PP_0066 - Ribosomal RNA small subunit methyltransferase B, at 76,233 to 77,543 _0066 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 73.858 kb on - strand, within PP_0063at 73.915 kb on + strand, within PP_0063at 73.915 kb on + strand, within PP_0063at 73.915 kb on + strand, within PP_0063at 73.915 kb on + strand, within PP_0063at 73.916 kb on - strand, within PP_0063at 74.082 kb on + strand, within PP_0063at 74.195 kb on + strand, within PP_0063at 74.196 kb on - strand, within PP_0063at 74.275 kb on + strand, within PP_0063at 74.275 kb on + strand, within PP_0063at 74.275 kb on + strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.276 kb on - strand, within PP_0063at 74.329 kb on + strandat 74.330 kb on - strandat 74.330 kb on - strandat 74.330 kb on - strandat 74.330 kb on - strandat 74.341 kb on + strandat 74.353 kb on + strandat 74.353 kb on + strandat 74.354 kb on - strandat 74.354 kb on - strandat 74.354 kb on - strandat 74.410 kb on + strandat 74.410 kb on + strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.411 kb on - strandat 74.431 kb on + strandat 74.431 kb on + strandat 74.431 kb on + strandat 74.431 kb on + strandat 74.431 kb on + strandat 74.497 kb on + strandat 74.497 kb on + strandat 74.498 kb on - strandat 74.646 kb on + strand, within PP_0064at 74.647 kb on - strand, within PP_0064at 74.647 kb on - strand, within PP_0064at 74.647 kb on - strand, within PP_0064at 74.654 kb on - strand, within PP_0064at 74.679 kb on + strand, within PP_0064at 74.680 kb on - strand, within PP_0064at 74.696 kb on + strand, within PP_0064at 74.985 kb on + strand, within PP_0065at 75.196 kb on + strand, within PP_0065at 75.196 kb on + strand, within PP_0065at 75.209 kb on + strand, within PP_0065at 75.431 kb on + strand, within PP_0065at 75.517 kb on - strand, within PP_0065at 75.728 kb on + strand, within PP_0065at 75.729 kb on - strand, within PP_0065at 75.729 kb on - strand, within PP_0065at 75.732 kb on - strandat 75.818 kb on + strand, within PP_0065at 75.818 kb on + strand, within PP_0065at 75.818 kb on + strand, within PP_0065at 75.818 kb on + strand, within PP_0065at 75.819 kb on - strand, within PP_0065at 76.131 kb on + strandat 76.131 kb on + strandat 76.222 kb on - strandat 76.234 kb on + strandat 76.235 kb on - strandat 76.270 kb on + strandat 76.271 kb on - strandat 76.271 kb on - strandat 76.273 kb on + strandat 76.273 kb on + strandat 76.273 kb on + strandat 76.273 kb on + strandat 76.274 kb on - strandat 76.274 kb on - strandat 76.435 kb on + strand, within PP_0066at 76.435 kb on + strand, within PP_0066at 76.435 kb on + strand, within PP_0066at 76.436 kb on - strand, within PP_0066at 76.436 kb on - strand, within PP_0066at 76.436 kb on - strand, within PP_0066at 76.436 kb on - strand, within PP_0066at 76.437 kb on + strand, within PP_0066at 76.437 kb on + strand, within PP_0066at 76.437 kb on + strand, within PP_0066at 76.438 kb on - strand, within PP_0066at 76.438 kb on - strand, within PP_0066at 76.438 kb on - strand, within PP_0066at 76.942 kb on + strand, within PP_0066at 76.942 kb on + strand, within PP_0066at 76.990 kb on + strand, within PP_0066at 76.991 kb on - strand, within PP_0066at 76.991 kb on - strand, within PP_0066at 76.991 kb on - strand, within PP_0066

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1
remove
73,858 - PP_0063 0.38 +1.4
73,915 + PP_0063 0.44 +0.7
73,915 + PP_0063 0.44 +1.2
73,915 + PP_0063 0.44 +0.7
73,915 + PP_0063 0.44 +0.0
73,916 - PP_0063 0.44 -0.0
74,082 + PP_0063 0.63 +1.6
74,195 + PP_0063 0.75 +1.2
74,196 - PP_0063 0.76 +1.3
74,275 + PP_0063 0.84 +1.7
74,275 + PP_0063 0.84 +2.4
74,275 + PP_0063 0.84 +1.8
74,276 - PP_0063 0.85 +1.0
74,276 - PP_0063 0.85 +3.4
74,276 - PP_0063 0.85 -1.4
74,276 - PP_0063 0.85 +1.5
74,276 - PP_0063 0.85 +0.6
74,329 + +1.2
74,330 - +1.2
74,330 - -1.8
74,330 - +0.6
74,330 - +0.9
74,341 + +2.0
74,353 + +1.6
74,353 + +1.6
74,354 - +2.7
74,354 - +0.9
74,354 - +1.9
74,410 + -0.5
74,410 + +1.0
74,411 - +0.7
74,411 - -0.8
74,411 - +0.1
74,411 - +0.7
74,411 - +1.8
74,411 - +0.2
74,431 + +1.2
74,431 + +0.4
74,431 + +1.1
74,431 + +0.1
74,431 + +1.5
74,497 + +0.5
74,497 + -0.5
74,498 - -0.3
74,646 + PP_0064 0.43 +0.2
74,647 - PP_0064 0.43 +0.7
74,647 - PP_0064 0.43 -1.0
74,647 - PP_0064 0.43 -1.0
74,654 - PP_0064 0.46 -0.1
74,679 + PP_0064 0.54 -0.0
74,680 - PP_0064 0.54 +2.4
74,696 + PP_0064 0.59 -0.3
74,985 + PP_0065 0.11 -0.0
75,196 + PP_0065 0.26 +0.8
75,196 + PP_0065 0.26 +1.8
75,209 + PP_0065 0.27 -0.7
75,431 + PP_0065 0.43 +0.2
75,517 - PP_0065 0.50 +0.2
75,728 + PP_0065 0.65 +0.3
75,729 - PP_0065 0.65 +0.7
75,729 - PP_0065 0.65 +0.8
75,732 - -0.4
75,818 + PP_0065 0.71 +2.0
75,818 + PP_0065 0.71 -0.4
75,818 + PP_0065 0.71 +1.0
75,818 + PP_0065 0.71 +0.4
75,819 - PP_0065 0.72 +0.1
76,131 + +1.4
76,131 + +0.9
76,222 - +0.4
76,234 + -0.7
76,235 - +0.6
76,270 + -3.3
76,271 - -4.3
76,271 - -5.3
76,273 + -4.0
76,273 + -2.4
76,273 + -4.8
76,273 + -4.7
76,274 - -4.8
76,274 - -3.0
76,435 + PP_0066 0.15 -3.5
76,435 + PP_0066 0.15 -1.4
76,435 + PP_0066 0.15 -3.1
76,436 - PP_0066 0.15 -4.0
76,436 - PP_0066 0.15 -4.6
76,436 - PP_0066 0.15 -3.5
76,436 - PP_0066 0.15 -4.0
76,437 + PP_0066 0.16 -4.9
76,437 + PP_0066 0.16 -2.4
76,437 + PP_0066 0.16 -4.0
76,438 - PP_0066 0.16 -4.4
76,438 - PP_0066 0.16 -3.9
76,438 - PP_0066 0.16 -4.0
76,942 + PP_0066 0.54 -2.8
76,942 + PP_0066 0.54 -4.0
76,990 + PP_0066 0.58 -2.0
76,991 - PP_0066 0.58 -4.8
76,991 - PP_0066 0.58 -4.1
76,991 - PP_0066 0.58 -4.4

Or see this region's nucleotide sequence