Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0014 and PP_0015 overlap by 4 nucleotides PP_0015 and PP_0016 are separated by 75 nucleotides
PP_0014: PP_0014 - putative transposase, at 17,208 to 19,166
_0014
PP_0015: PP_0015 - putative transposon protein, at 19,163 to 20,122
_0015
PP_0016: PP_0016 - conserved hypothetical protein, at 20,198 to 22,114
_0016
Position (kb) 19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 18.244 kb on + strand, within PP_0014 at 18.244 kb on + strand, within PP_0014 at 18.245 kb on - strand, within PP_0014 at 18.321 kb on + strand, within PP_0014 at 18.322 kb on - strand, within PP_0014 at 18.322 kb on - strand, within PP_0014 at 18.392 kb on + strand, within PP_0014 at 18.578 kb on + strand, within PP_0014 at 18.578 kb on + strand, within PP_0014 at 18.579 kb on - strand, within PP_0014 at 18.704 kb on + strand, within PP_0014 at 18.725 kb on + strand, within PP_0014 at 18.751 kb on + strand, within PP_0014 at 18.752 kb on - strand, within PP_0014 at 18.901 kb on - strand, within PP_0014 at 18.902 kb on + strand, within PP_0014 at 18.902 kb on + strand, within PP_0014 at 18.914 kb on + strand, within PP_0014 at 18.915 kb on - strand, within PP_0014 at 18.915 kb on - strand, within PP_0014 at 18.915 kb on - strand, within PP_0014 at 18.926 kb on + strand, within PP_0014 at 18.926 kb on + strand, within PP_0014 at 18.939 kb on + strand, within PP_0014 at 18.940 kb on - strand, within PP_0014 at 18.950 kb on + strand, within PP_0014 at 18.951 kb on - strand, within PP_0014 at 19.066 kb on + strand at 19.066 kb on + strand at 19.066 kb on + strand at 19.067 kb on - strand at 19.097 kb on + strand at 19.097 kb on + strand at 19.097 kb on + strand at 19.097 kb on + strand at 19.098 kb on - strand at 19.098 kb on - strand at 19.098 kb on - strand at 19.098 kb on - strand at 19.103 kb on + strand at 19.104 kb on - strand at 19.157 kb on + strand at 19.157 kb on + strand at 19.158 kb on - strand at 19.158 kb on - strand at 19.158 kb on - strand at 19.181 kb on + strand at 19.205 kb on + strand at 19.205 kb on + strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.214 kb on - strand at 19.231 kb on + strand at 19.232 kb on - strand at 19.269 kb on + strand, within PP_0015 at 19.270 kb on - strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.310 kb on - strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.542 kb on + strand, within PP_0015 at 19.543 kb on - strand, within PP_0015 at 19.610 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.672 kb on + strand, within PP_0015 at 19.720 kb on - strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.860 kb on + strand, within PP_0015 at 19.876 kb on + strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.887 kb on - strand, within PP_0015 at 19.898 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.914 kb on - strand at 20.021 kb on + strand, within PP_0015 at 20.021 kb on + strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.116 kb on + strand at 20.116 kb on + strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.154 kb on + strand at 20.170 kb on - strand at 20.170 kb on - strand at 20.170 kb on - strand at 20.193 kb on + strand at 20.194 kb on - strand at 20.194 kb on - strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.212 kb on - strand at 20.212 kb on - strand at 20.212 kb on - strand at 20.252 kb on + strand at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.447 kb on + strand, within PP_0016 at 20.596 kb on + strand, within PP_0016 at 20.597 kb on - strand, within PP_0016 at 20.659 kb on + strand, within PP_0016 at 20.659 kb on + strand, within PP_0016 at 20.700 kb on - strand, within PP_0016 at 20.745 kb on - strand, within PP_0016 at 20.838 kb on + strand, within PP_0016 at 20.844 kb on + strand, within PP_0016 at 20.854 kb on + strand, within PP_0016 at 20.855 kb on - strand, within PP_0016 at 20.855 kb on - strand, within PP_0016 at 20.979 kb on + strand, within PP_0016 at 20.980 kb on - strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 21.075 kb on + strand, within PP_0016
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 18,244 + PP_0014 0.53 +0.1 18,244 + PP_0014 0.53 -0.6 18,245 - PP_0014 0.53 -1.0 18,321 + PP_0014 0.57 +0.8 18,322 - PP_0014 0.57 +0.3 18,322 - PP_0014 0.57 -0.2 18,392 + PP_0014 0.60 +0.4 18,578 + PP_0014 0.70 +0.7 18,578 + PP_0014 0.70 +1.0 18,579 - PP_0014 0.70 -0.3 18,704 + PP_0014 0.76 -0.4 18,725 + PP_0014 0.77 -2.1 18,751 + PP_0014 0.79 -0.9 18,752 - PP_0014 0.79 +0.2 18,901 - PP_0014 0.86 -0.5 18,902 + PP_0014 0.86 -0.7 18,902 + PP_0014 0.86 -0.2 18,914 + PP_0014 0.87 -1.8 18,915 - PP_0014 0.87 -0.6 18,915 - PP_0014 0.87 -0.3 18,915 - PP_0014 0.87 -0.3 18,926 + PP_0014 0.88 +0.7 18,926 + PP_0014 0.88 -1.2 18,939 + PP_0014 0.88 -0.2 18,940 - PP_0014 0.88 -0.8 18,950 + PP_0014 0.89 -0.4 18,951 - PP_0014 0.89 -1.0 19,066 + -0.3 19,066 + -0.7 19,066 + -0.8 19,067 - +0.1 19,097 + +0.1 19,097 + -1.1 19,097 + -1.0 19,097 + +0.3 19,098 - -0.2 19,098 - -0.8 19,098 - +0.7 19,098 - +0.2 19,103 + -1.2 19,104 - -0.2 19,157 + -0.5 19,157 + -1.1 19,158 - -0.2 19,158 - -0.3 19,158 - -1.2 19,181 + -0.3 19,205 + -0.5 19,205 + -0.1 19,206 - -0.2 19,206 - +0.1 19,206 - -0.3 19,213 + -0.4 19,213 + +0.4 19,213 + +0.1 19,213 + +0.4 19,213 + +0.7 19,214 - -0.3 19,231 + -1.6 19,232 - +0.5 19,269 + PP_0015 0.11 +0.8 19,270 - PP_0015 0.11 -0.3 19,309 + PP_0015 0.15 -1.3 19,309 + PP_0015 0.15 -0.8 19,310 - PP_0015 0.15 +0.4 19,367 + PP_0015 0.21 -0.6 19,367 + PP_0015 0.21 -0.0 19,367 + PP_0015 0.21 +0.2 19,368 - PP_0015 0.21 -0.2 19,368 - PP_0015 0.21 -0.1 19,529 - PP_0015 0.38 -0.9 19,529 - PP_0015 0.38 -0.5 19,542 + PP_0015 0.39 -0.4 19,543 - PP_0015 0.40 -0.3 19,610 + PP_0015 0.47 -0.7 19,618 + PP_0015 0.47 +0.9 19,618 + PP_0015 0.47 -2.1 19,618 + PP_0015 0.47 -0.8 19,619 - PP_0015 0.47 -0.4 19,619 - PP_0015 0.47 +0.2 19,619 - PP_0015 0.47 -0.2 19,628 + PP_0015 0.48 -0.6 19,628 + PP_0015 0.48 -1.3 19,629 - PP_0015 0.49 -0.4 19,629 - PP_0015 0.49 -0.2 19,629 - PP_0015 0.49 -0.5 19,629 - PP_0015 0.49 -0.5 19,629 - PP_0015 0.49 -0.3 19,672 + PP_0015 0.53 -1.8 19,720 - PP_0015 0.58 +0.6 19,789 + PP_0015 0.65 +0.4 19,789 + PP_0015 0.65 -2.1 19,789 + PP_0015 0.65 -0.4 19,790 - PP_0015 0.65 -0.5 19,790 - PP_0015 0.65 -0.7 19,790 - PP_0015 0.65 +0.5 19,790 - PP_0015 0.65 -2.7 19,860 + PP_0015 0.73 +0.0 19,876 + PP_0015 0.74 -0.7 19,877 - PP_0015 0.74 -0.5 19,877 - PP_0015 0.74 +0.7 19,886 + PP_0015 0.75 -0.9 19,886 + PP_0015 0.75 +0.0 19,886 + PP_0015 0.75 -1.4 19,887 - PP_0015 0.75 -1.2 19,898 + PP_0015 0.77 -0.6 19,913 + PP_0015 0.78 -0.8 19,913 + PP_0015 0.78 -1.0 19,914 - -0.0 20,021 + PP_0015 0.89 -3.8 20,021 + PP_0015 0.89 -2.6 20,022 - PP_0015 0.89 -1.0 20,022 - PP_0015 0.89 -0.2 20,022 - PP_0015 0.89 -0.0 20,022 - PP_0015 0.89 +0.9 20,116 + -4.0 20,116 + -1.5 20,117 - -1.3 20,117 - -0.4 20,117 - -1.3 20,117 - -2.1 20,154 + -1.2 20,170 - -0.3 20,170 - +0.5 20,170 - +1.6 20,193 + +0.0 20,194 - +0.0 20,194 - +0.4 20,211 + +1.2 20,211 + -0.3 20,211 + +0.2 20,211 + +0.3 20,211 + -0.5 20,211 + -2.3 20,212 - -1.1 20,212 - -1.0 20,212 - +1.9 20,252 + -0.0 20,425 - PP_0016 0.12 +0.3 20,425 - PP_0016 0.12 -0.0 20,425 - PP_0016 0.12 +0.7 20,425 - PP_0016 0.12 -0.1 20,447 + PP_0016 0.13 +0.0 20,596 + PP_0016 0.21 -2.2 20,597 - PP_0016 0.21 -0.8 20,659 + PP_0016 0.24 -0.8 20,659 + PP_0016 0.24 -1.5 20,700 - PP_0016 0.26 +0.2 20,745 - PP_0016 0.29 -0.5 20,838 + PP_0016 0.33 -1.3 20,844 + PP_0016 0.34 -0.6 20,854 + PP_0016 0.34 -0.6 20,855 - PP_0016 0.34 +2.6 20,855 - PP_0016 0.34 -0.1 20,979 + PP_0016 0.41 -0.4 20,980 - PP_0016 0.41 -2.0 20,981 + PP_0016 0.41 -0.2 20,981 + PP_0016 0.41 -1.1 20,981 + PP_0016 0.41 -0.8 20,981 + PP_0016 0.41 -1.3 20,981 + PP_0016 0.41 -0.3 20,981 + PP_0016 0.41 -1.4 20,982 - PP_0016 0.41 +0.2 20,982 - PP_0016 0.41 -0.8 20,982 - PP_0016 0.41 +0.2 21,075 + PP_0016 0.46 -0.5
Or see this region's nucleotide sequence