Strain Fitness in Escherichia coli BW25113 around b1205

Experiment: carbon source D-Mannose 0.5mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntychF and pth are separated by 116 nucleotidespth and ychH are separated by 277 nucleotidesychH and ychM are separated by 54 nucleotides b1203: ychF - translation-associated GTPase (NCBI), at 1,255,944 to 1,257,035 ychF b1204: pth - peptidyl-tRNA hydrolase (NCBI), at 1,257,152 to 1,257,736 pth b1205: ychH - predicted inner membrane protein (NCBI), at 1,258,014 to 1,258,292 ychH b1206: ychM - orf, hypothetical protein (VIMSS), at 1,258,347 to 1,260,026 ychM Position (kb) 1258 1259Strain fitness (log2 ratio) -1 0 1at 1257.756 kb on + strandat 1257.756 kb on + strandat 1257.756 kb on + strandat 1257.957 kb on + strandat 1258.135 kb on - strand, within ychHat 1258.207 kb on + strand, within ychHat 1258.341 kb on - strandat 1258.399 kb on + strandat 1258.434 kb on - strandat 1258.474 kb on - strandat 1258.636 kb on - strand, within ychMat 1258.636 kb on - strand, within ychMat 1258.716 kb on - strand, within ychMat 1258.716 kb on - strand, within ychMat 1258.860 kb on + strand, within ychMat 1259.080 kb on - strand, within ychMat 1259.080 kb on - strand, within ychMat 1259.171 kb on - strand, within ychMat 1259.178 kb on - strand, within ychMat 1259.255 kb on - strand, within ychMat 1259.273 kb on + strand, within ychM

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source D-Mannose 0.5mM
remove
1,257,756 + +0.4
1,257,756 + -1.7
1,257,756 + +0.7
1,257,957 + -0.3
1,258,135 - ychH b1205 0.43 +1.0
1,258,207 + ychH b1205 0.69 +0.3
1,258,341 - -0.0
1,258,399 + +1.0
1,258,434 - -1.3
1,258,474 - +0.9
1,258,636 - ychM b1206 0.17 +0.1
1,258,636 - ychM b1206 0.17 +0.6
1,258,716 - ychM b1206 0.22 +0.8
1,258,716 - ychM b1206 0.22 -1.5
1,258,860 + ychM b1206 0.31 -1.1
1,259,080 - ychM b1206 0.44 -0.1
1,259,080 - ychM b1206 0.44 +0.9
1,259,171 - ychM b1206 0.49 +0.9
1,259,178 - ychM b1206 0.49 +0.4
1,259,255 - ychM b1206 0.54 -0.6
1,259,273 + ychM b1206 0.55 -0.6

Or see this region's nucleotide sequence