Strain Fitness in Pseudomonas putida KT2440 around PP_5439

Experiment: P. putida PUT10 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0284 and PP_5439 are separated by 131 nucleotidesPP_5439 and PP_5440 are separated by 239 nucleotidesPP_5440 and PP_t72 are separated by 188 nucleotidesPP_t72 and PP_0285 are separated by 90 nucleotides PP_0284: PP_0284 - gamma-aminobutyrate permease, at 341,484 to 342,869 _0284 PP_5439: PP_5439 - conserved protein of unknown function, at 343,001 to 343,444 _5439 PP_5440: PP_5440 - conserved protein of unknown function, at 343,684 to 343,911 _5440 PP_t72: PP_t72 - tRNA-Phe, at 344,100 to 344,175 _t72 PP_0285: PP_0285 - Fe(2+)-trafficking protein, at 344,266 to 344,538 _0285 Position (kb) 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1at 342.014 kb on - strand, within PP_0284at 342.036 kb on - strand, within PP_0284at 342.213 kb on - strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.225 kb on + strand, within PP_0284at 342.226 kb on - strand, within PP_0284at 342.226 kb on - strand, within PP_0284at 342.298 kb on - strand, within PP_0284at 342.298 kb on - strand, within PP_0284at 342.317 kb on + strand, within PP_0284at 342.396 kb on + strand, within PP_0284at 342.396 kb on + strand, within PP_0284at 342.397 kb on - strand, within PP_0284at 342.603 kb on + strand, within PP_0284at 342.604 kb on - strand, within PP_0284at 342.794 kb on + strandat 342.795 kb on - strandat 342.989 kb on + strandat 342.989 kb on + strandat 342.990 kb on - strandat 342.990 kb on - strandat 342.991 kb on + strandat 342.991 kb on + strandat 342.991 kb on + strandat 342.991 kb on + strandat 342.992 kb on - strandat 342.992 kb on - strandat 342.992 kb on - strandat 342.992 kb on - strandat 342.992 kb on - strandat 343.057 kb on + strand, within PP_5439at 343.059 kb on + strand, within PP_5439at 343.059 kb on + strand, within PP_5439at 343.060 kb on - strand, within PP_5439at 343.060 kb on - strand, within PP_5439at 343.060 kb on - strand, within PP_5439at 343.158 kb on + strand, within PP_5439at 343.158 kb on + strand, within PP_5439at 343.159 kb on - strand, within PP_5439at 343.314 kb on + strand, within PP_5439at 343.314 kb on + strand, within PP_5439at 343.315 kb on - strand, within PP_5439at 343.373 kb on + strand, within PP_5439at 343.479 kb on - strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.548 kb on + strandat 343.549 kb on - strandat 343.549 kb on - strandat 343.549 kb on - strandat 343.553 kb on - strandat 343.553 kb on - strandat 343.561 kb on + strandat 343.583 kb on + strandat 343.584 kb on - strandat 343.584 kb on - strandat 343.584 kb on - strandat 343.584 kb on - strandat 343.669 kb on + strandat 343.669 kb on + strandat 343.697 kb on - strandat 343.717 kb on + strand, within PP_5440at 343.717 kb on + strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.739 kb on - strand, within PP_5440at 343.741 kb on + strand, within PP_5440at 343.742 kb on - strand, within PP_5440at 343.779 kb on + strand, within PP_5440at 343.779 kb on + strand, within PP_5440at 343.780 kb on - strand, within PP_5440at 343.852 kb on + strand, within PP_5440at 343.852 kb on + strand, within PP_5440at 343.853 kb on - strand, within PP_5440at 343.853 kb on - strand, within PP_5440at 343.853 kb on - strand, within PP_5440at 343.909 kb on + strandat 343.909 kb on + strandat 343.910 kb on - strandat 343.961 kb on + strandat 343.962 kb on - strandat 344.286 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1
remove
342,014 - PP_0284 0.38 +0.2
342,036 - PP_0284 0.40 +0.9
342,213 - PP_0284 0.53 +0.0
342,225 + PP_0284 0.53 +0.0
342,225 + PP_0284 0.53 -0.1
342,225 + PP_0284 0.53 -0.1
342,225 + PP_0284 0.53 +0.2
342,225 + PP_0284 0.53 -2.1
342,226 - PP_0284 0.54 -0.0
342,226 - PP_0284 0.54 +0.7
342,298 - PP_0284 0.59 +1.0
342,298 - PP_0284 0.59 -0.4
342,317 + PP_0284 0.60 +0.6
342,396 + PP_0284 0.66 +0.7
342,396 + PP_0284 0.66 +1.4
342,397 - PP_0284 0.66 +0.3
342,603 + PP_0284 0.81 +0.4
342,604 - PP_0284 0.81 -0.4
342,794 + +0.0
342,795 - -0.9
342,989 + -0.2
342,989 + -0.8
342,990 - -1.1
342,990 - -0.5
342,991 + +1.7
342,991 + +1.0
342,991 + -0.5
342,991 + +0.2
342,992 - -0.3
342,992 - +1.4
342,992 - -0.6
342,992 - +0.3
342,992 - -1.7
343,057 + PP_5439 0.13 -1.8
343,059 + PP_5439 0.13 -0.5
343,059 + PP_5439 0.13 -3.6
343,060 - PP_5439 0.13 -1.9
343,060 - PP_5439 0.13 -2.4
343,060 - PP_5439 0.13 -2.0
343,158 + PP_5439 0.35 -1.7
343,158 + PP_5439 0.35 -0.5
343,159 - PP_5439 0.36 -2.1
343,314 + PP_5439 0.70 -0.6
343,314 + PP_5439 0.70 -3.7
343,315 - PP_5439 0.71 -3.6
343,373 + PP_5439 0.84 +0.3
343,479 - -0.6
343,548 + -1.2
343,548 + +0.2
343,548 + +0.4
343,548 + -0.3
343,548 + -0.0
343,548 + +0.8
343,549 - +0.2
343,549 - -0.3
343,549 - +1.3
343,553 - +0.3
343,553 - -1.8
343,561 + +0.3
343,583 + -0.1
343,584 - -0.8
343,584 - -0.2
343,584 - +0.1
343,584 - -0.8
343,669 + -0.1
343,669 + -0.7
343,697 - +0.8
343,717 + PP_5440 0.14 -0.6
343,717 + PP_5440 0.14 +0.4
343,739 - PP_5440 0.24 -1.8
343,739 - PP_5440 0.24 -0.2
343,739 - PP_5440 0.24 -1.9
343,739 - PP_5440 0.24 +0.1
343,741 + PP_5440 0.25 +0.1
343,742 - PP_5440 0.25 +0.6
343,779 + PP_5440 0.42 -0.1
343,779 + PP_5440 0.42 -0.4
343,780 - PP_5440 0.42 -2.0
343,852 + PP_5440 0.74 +0.1
343,852 + PP_5440 0.74 +0.6
343,853 - PP_5440 0.74 -0.8
343,853 - PP_5440 0.74 -1.4
343,853 - PP_5440 0.74 -2.7
343,909 + -0.4
343,909 + -0.3
343,910 - -2.0
343,961 + -1.1
343,962 - -1.2
344,286 - +0.7

Or see this region's nucleotide sequence