Strain Fitness in Pseudomonas putida KT2440 around PP_5270

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
6,019,212	-				+0.4
6,019,346	-				-0.0
6,019,412	+				-0.1
6,019,412	+				-0.7
6,019,413	-				-1.1
6,019,506	-		PP_5270	0.12	-0.2
6,019,506	-		PP_5270	0.12	-1.4
6,019,631	-		PP_5270	0.22	-0.7
6,019,756	+		PP_5270	0.32	+1.8
6,019,756	+		PP_5270	0.32	-0.5
6,019,756	+		PP_5270	0.32	+0.8
6,019,756	+		PP_5270	0.32	-2.3
6,019,838	-		PP_5270	0.38	-0.7
6,019,883	-		PP_5270	0.41	-1.8
6,020,158	+		PP_5270	0.62	-1.8
6,020,181	+		PP_5270	0.64	-1.4
6,020,260	+		PP_5270	0.70	-2.3
6,020,261	-		PP_5270	0.70	-2.5
6,020,308	+		PP_5270	0.74	-1.7
6,020,393	-		PP_5270	0.80	-1.0
6,020,497	+		PP_5270	0.88	-1.1
6,020,596	+				-0.5
6,020,597	-				-1.5
6,020,597	-				-1.9
6,020,597	-				-1.2
6,020,597	-				-1.9
6,020,597	-				-0.1
6,020,597	-				-0.7
6,020,597	-				-0.3
6,020,599	+				-1.3
6,020,599	+				-0.9
6,020,599	+				-0.2
6,020,599	+				-0.6
6,020,600	-				-3.4
6,020,600	-				-0.4
6,020,600	-				-0.4
6,020,634	+				-2.4
6,020,686	-				+0.6
6,020,711	+				+0.0
6,020,713	+				-3.8
6,020,713	+				-0.0
6,020,713	+				+0.2
6,020,713	+				-1.3
6,020,714	-				+0.5
6,020,714	-				+0.5
6,020,714	-				+0.7
6,020,804	+				+0.9
6,020,804	+				-0.9
6,020,865	-		PP_5271	0.12	+0.5
6,020,886	-		PP_5271	0.17	+0.9
6,020,886	-		PP_5271	0.17	+0.1
6,020,937	-		PP_5271	0.27	+0.4
6,020,982	+		PP_5271	0.36	-0.0
6,020,982	+		PP_5271	0.36	-1.6
6,020,983	-		PP_5271	0.36	-1.2
6,020,983	-		PP_5271	0.36	-0.8
6,021,145	-				-0.4
6,021,161	+		PP_5271	0.73	+0.0
6,021,162	-		PP_5271	0.73	+0.0
6,021,240	+		PP_5271	0.89	+0.1
6,021,240	+		PP_5271	0.89	+0.6
6,021,240	+		PP_5271	0.89	-0.7
6,021,240	+		PP_5271	0.89	-1.1
6,021,241	-		PP_5271	0.89	+0.2
6,021,241	-		PP_5271	0.89	-0.4
6,021,241	-		PP_5271	0.89	-0.5
6,021,409	+		PP_5272	0.32	-0.0
6,021,444	+		PP_5272	0.42	-1.7
6,021,444	+		PP_5272	0.42	-0.7
6,021,444	+		PP_5272	0.42	-1.2
6,021,444	+		PP_5272	0.42	-0.5
6,021,445	-		PP_5272	0.42	-0.5
6,021,445	-		PP_5272	0.42	-2.4
6,021,445	-		PP_5272	0.42	-0.4
6,021,445	-		PP_5272	0.42	-1.7
6,021,553	+		PP_5272	0.73	-0.5