Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5202 and PP_5203 are separated by 322 nucleotides PP_5203 and PP_5204 are separated by 19 nucleotides PP_5204 and PP_5205 are separated by 34 nucleotides PP_5205 and PP_5206 are separated by 95 nucleotides
PP_5202: PP_5202 - putative cell division protein, at 5,934,337 to 5,934,657
_5202
PP_5203: PP_5203 - 5-formyltetrahydrofolate cyclo-ligase, at 5,934,980 to 5,935,588
_5203
PP_5204: PP_5204 - conserved protein of unknown function, at 5,935,608 to 5,935,904
_5204
PP_5205: PP_5205 - conserved protein of unknown function, at 5,935,939 to 5,936,388
_5205
PP_5206: PP_5206 - putative translation-related protein, at 5,936,484 to 5,937,443
_5206
Position (kb) 5935
5936 Strain fitness (log2 ratio) -1
0
1
2 at 5934.619 kb on - strand, within PP_5202 at 5934.642 kb on + strand at 5934.665 kb on - strand at 5934.702 kb on + strand at 5934.703 kb on - strand at 5934.703 kb on - strand at 5934.826 kb on - strand at 5934.842 kb on + strand at 5934.903 kb on + strand at 5934.903 kb on + strand at 5934.904 kb on - strand at 5934.904 kb on - strand at 5934.917 kb on - strand at 5934.946 kb on + strand at 5935.014 kb on + strand at 5935.014 kb on + strand at 5935.015 kb on - strand at 5935.048 kb on + strand, within PP_5203 at 5935.085 kb on + strand, within PP_5203 at 5935.140 kb on - strand, within PP_5203 at 5935.211 kb on + strand, within PP_5203 at 5935.211 kb on + strand, within PP_5203 at 5935.212 kb on - strand, within PP_5203 at 5935.212 kb on - strand, within PP_5203 at 5935.300 kb on + strand, within PP_5203 at 5935.366 kb on - strand, within PP_5203 at 5935.421 kb on + strand, within PP_5203 at 5935.421 kb on + strand, within PP_5203 at 5935.421 kb on + strand, within PP_5203 at 5935.421 kb on + strand, within PP_5203 at 5935.422 kb on - strand, within PP_5203 at 5935.422 kb on - strand, within PP_5203 at 5935.422 kb on - strand, within PP_5203 at 5935.422 kb on - strand, within PP_5203 at 5935.439 kb on + strand, within PP_5203 at 5935.440 kb on - strand, within PP_5203 at 5935.440 kb on - strand, within PP_5203 at 5935.572 kb on - strand at 5935.607 kb on - strand at 5935.645 kb on + strand, within PP_5204 at 5935.646 kb on - strand, within PP_5204 at 5935.646 kb on - strand, within PP_5204 at 5935.691 kb on + strand, within PP_5204 at 5935.749 kb on - strand, within PP_5204 at 5935.791 kb on + strand, within PP_5204 at 5935.791 kb on + strand, within PP_5204 at 5935.831 kb on - strand, within PP_5204 at 5935.910 kb on + strand at 5935.911 kb on - strand at 5936.032 kb on + strand, within PP_5205 at 5936.032 kb on + strand, within PP_5205 at 5936.032 kb on + strand, within PP_5205 at 5936.032 kb on + strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.033 kb on - strand, within PP_5205 at 5936.086 kb on + strand, within PP_5205 at 5936.087 kb on - strand, within PP_5205 at 5936.183 kb on - strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.243 kb on + strand, within PP_5205 at 5936.244 kb on - strand, within PP_5205 at 5936.244 kb on - strand, within PP_5205 at 5936.391 kb on - strand at 5936.398 kb on + strand at 5936.399 kb on - strand at 5936.501 kb on + strand at 5936.557 kb on - strand at 5936.707 kb on + strand, within PP_5206 at 5936.787 kb on + strand, within PP_5206
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 5,934,619 - PP_5202 0.88 -0.4 5,934,642 + -0.0 5,934,665 - +0.9 5,934,702 + +1.2 5,934,703 - +1.0 5,934,703 - +0.4 5,934,826 - +1.2 5,934,842 + -0.5 5,934,903 + +0.7 5,934,903 + +1.2 5,934,904 - +0.0 5,934,904 - +1.1 5,934,917 - -0.1 5,934,946 + +0.5 5,935,014 + -0.1 5,935,014 + +0.2 5,935,015 - +0.8 5,935,048 + PP_5203 0.11 -1.5 5,935,085 + PP_5203 0.17 +0.1 5,935,140 - PP_5203 0.26 -0.6 5,935,211 + PP_5203 0.38 -1.7 5,935,211 + PP_5203 0.38 +0.1 5,935,212 - PP_5203 0.38 +2.0 5,935,212 - PP_5203 0.38 +0.1 5,935,300 + PP_5203 0.53 +1.6 5,935,366 - PP_5203 0.63 +0.1 5,935,421 + PP_5203 0.72 +0.3 5,935,421 + PP_5203 0.72 -0.1 5,935,421 + PP_5203 0.72 -0.0 5,935,421 + PP_5203 0.72 -0.5 5,935,422 - PP_5203 0.73 +0.2 5,935,422 - PP_5203 0.73 +0.1 5,935,422 - PP_5203 0.73 +0.8 5,935,422 - PP_5203 0.73 -0.2 5,935,439 + PP_5203 0.75 +1.1 5,935,440 - PP_5203 0.76 +0.9 5,935,440 - PP_5203 0.76 +0.8 5,935,572 - +0.6 5,935,607 - +0.6 5,935,645 + PP_5204 0.12 +0.4 5,935,646 - PP_5204 0.13 +1.0 5,935,646 - PP_5204 0.13 +1.8 5,935,691 + PP_5204 0.28 +1.7 5,935,749 - PP_5204 0.47 +0.9 5,935,791 + PP_5204 0.62 +0.6 5,935,791 + PP_5204 0.62 +0.8 5,935,831 - PP_5204 0.75 +1.2 5,935,910 + +1.1 5,935,911 - +0.1 5,936,032 + PP_5205 0.21 +1.2 5,936,032 + PP_5205 0.21 +0.8 5,936,032 + PP_5205 0.21 +1.1 5,936,032 + PP_5205 0.21 -0.0 5,936,033 - PP_5205 0.21 +0.5 5,936,033 - PP_5205 0.21 -0.5 5,936,033 - PP_5205 0.21 +0.4 5,936,033 - PP_5205 0.21 -0.1 5,936,086 + PP_5205 0.33 +0.9 5,936,087 - PP_5205 0.33 +0.1 5,936,183 - PP_5205 0.54 +0.2 5,936,243 + PP_5205 0.68 +1.1 5,936,243 + PP_5205 0.68 +0.1 5,936,243 + PP_5205 0.68 +0.4 5,936,243 + PP_5205 0.68 -0.5 5,936,244 - PP_5205 0.68 -0.2 5,936,244 - PP_5205 0.68 -0.4 5,936,391 - -0.2 5,936,398 + +0.4 5,936,399 - +0.2 5,936,501 + +0.4 5,936,557 - -0.7 5,936,707 + PP_5206 0.23 +0.7 5,936,787 + PP_5206 0.32 -0.1
Or see this region's nucleotide sequence