Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5072 and PP_5073 are separated by 67 nucleotides PP_5073 and PP_5074 are separated by 56 nucleotides PP_5074 and PP_5075 are separated by 194 nucleotides
PP_5072: PP_5072 - efflux transporter, at 5,788,844 to 5,790,121
_5072
PP_5073: PP_5073 - conserved exported protein of unknown function, at 5,790,189 to 5,790,596
_5073
PP_5074: PP_5074 - Uroporphyrinogen decarboxylase, at 5,790,653 to 5,791,717
_5074
PP_5075: PP_5075 - glutamate synthase (NADPH) beta subunit, at 5,791,912 to 5,793,330
_5075
Position (kb) 5790
5791
5792 Strain fitness (log2 ratio) -2
-1
0
1 at 5789.711 kb on + strand, within PP_5072 at 5789.711 kb on + strand, within PP_5072 at 5789.712 kb on - strand, within PP_5072 at 5789.722 kb on + strand, within PP_5072 at 5789.723 kb on - strand, within PP_5072 at 5789.726 kb on + strand, within PP_5072 at 5789.726 kb on + strand, within PP_5072 at 5789.726 kb on + strand, within PP_5072 at 5789.727 kb on - strand, within PP_5072 at 5789.727 kb on - strand, within PP_5072 at 5789.727 kb on - strand, within PP_5072 at 5789.791 kb on + strand, within PP_5072 at 5789.792 kb on - strand, within PP_5072 at 5789.792 kb on - strand, within PP_5072 at 5789.792 kb on - strand, within PP_5072 at 5789.799 kb on + strand, within PP_5072 at 5789.799 kb on + strand, within PP_5072 at 5789.957 kb on + strand, within PP_5072 at 5789.957 kb on + strand, within PP_5072 at 5789.973 kb on - strand, within PP_5072 at 5789.973 kb on - strand, within PP_5072 at 5790.209 kb on + strand at 5790.210 kb on - strand at 5790.210 kb on - strand at 5790.210 kb on - strand at 5790.352 kb on + strand, within PP_5073 at 5790.523 kb on + strand, within PP_5073 at 5790.634 kb on + strand at 5791.828 kb on - strand at 5791.950 kb on + strand at 5791.951 kb on - strand at 5792.294 kb on + strand, within PP_5075 at 5792.295 kb on - strand, within PP_5075 at 5792.295 kb on - strand, within PP_5075 at 5792.329 kb on - strand, within PP_5075 at 5792.372 kb on + strand, within PP_5075 at 5792.373 kb on - strand, within PP_5075 at 5792.412 kb on + strand, within PP_5075 at 5792.412 kb on + strand, within PP_5075 at 5792.591 kb on + strand, within PP_5075 at 5792.591 kb on + strand, within PP_5075 at 5792.591 kb on + strand, within PP_5075 at 5792.591 kb on + strand, within PP_5075 at 5792.591 kb on + strand, within PP_5075 at 5792.592 kb on - strand, within PP_5075 at 5792.592 kb on - strand, within PP_5075 at 5792.592 kb on - strand, within PP_5075 at 5792.592 kb on - strand, within PP_5075 at 5792.592 kb on - strand, within PP_5075 at 5792.592 kb on - strand, within PP_5075 at 5792.592 kb on - strand, within PP_5075 at 5792.597 kb on + strand, within PP_5075 at 5792.597 kb on + strand, within PP_5075 at 5792.597 kb on + strand, within PP_5075 at 5792.597 kb on + strand, within PP_5075 at 5792.597 kb on + strand, within PP_5075 at 5792.598 kb on - strand, within PP_5075 at 5792.598 kb on - strand, within PP_5075 at 5792.598 kb on - strand, within PP_5075 at 5792.598 kb on - strand, within PP_5075 at 5792.598 kb on - strand, within PP_5075 at 5792.598 kb on - strand, within PP_5075 at 5792.598 kb on - strand, within PP_5075 at 5792.598 kb on - strand, within PP_5075 at 5792.598 kb on - strand, within PP_5075 at 5792.602 kb on - strand, within PP_5075 at 5792.602 kb on - strand, within PP_5075 at 5792.602 kb on - strand, within PP_5075 at 5792.627 kb on + strand, within PP_5075
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 5,789,711 + PP_5072 0.68 -0.7 5,789,711 + PP_5072 0.68 -2.0 5,789,712 - PP_5072 0.68 -0.7 5,789,722 + PP_5072 0.69 +0.1 5,789,723 - PP_5072 0.69 -0.6 5,789,726 + PP_5072 0.69 -0.2 5,789,726 + PP_5072 0.69 -1.2 5,789,726 + PP_5072 0.69 -0.1 5,789,727 - PP_5072 0.69 -1.4 5,789,727 - PP_5072 0.69 +0.7 5,789,727 - PP_5072 0.69 -0.6 5,789,791 + PP_5072 0.74 +0.2 5,789,792 - PP_5072 0.74 +0.3 5,789,792 - PP_5072 0.74 -1.3 5,789,792 - PP_5072 0.74 -0.6 5,789,799 + PP_5072 0.75 +0.3 5,789,799 + PP_5072 0.75 +0.2 5,789,957 + PP_5072 0.87 +0.2 5,789,957 + PP_5072 0.87 -0.2 5,789,973 - PP_5072 0.88 +0.0 5,789,973 - PP_5072 0.88 +0.7 5,790,209 + +0.6 5,790,210 - +0.6 5,790,210 - +1.0 5,790,210 - -0.4 5,790,352 + PP_5073 0.40 +0.7 5,790,523 + PP_5073 0.82 -0.1 5,790,634 + +0.8 5,791,828 - +0.6 5,791,950 + +0.2 5,791,951 - -0.5 5,792,294 + PP_5075 0.27 -1.1 5,792,295 - PP_5075 0.27 +0.0 5,792,295 - PP_5075 0.27 +0.3 5,792,329 - PP_5075 0.29 +0.9 5,792,372 + PP_5075 0.32 -1.1 5,792,373 - PP_5075 0.32 -0.4 5,792,412 + PP_5075 0.35 -1.2 5,792,412 + PP_5075 0.35 +0.6 5,792,591 + PP_5075 0.48 +0.3 5,792,591 + PP_5075 0.48 +0.5 5,792,591 + PP_5075 0.48 -0.5 5,792,591 + PP_5075 0.48 -0.5 5,792,591 + PP_5075 0.48 -0.7 5,792,592 - PP_5075 0.48 -0.3 5,792,592 - PP_5075 0.48 -1.0 5,792,592 - PP_5075 0.48 -0.0 5,792,592 - PP_5075 0.48 +0.0 5,792,592 - PP_5075 0.48 +1.3 5,792,592 - PP_5075 0.48 -0.4 5,792,592 - PP_5075 0.48 -1.3 5,792,597 + PP_5075 0.48 -0.5 5,792,597 + PP_5075 0.48 -0.6 5,792,597 + PP_5075 0.48 +0.5 5,792,597 + PP_5075 0.48 -0.6 5,792,597 + PP_5075 0.48 +1.1 5,792,598 - PP_5075 0.48 -0.7 5,792,598 - PP_5075 0.48 -0.8 5,792,598 - PP_5075 0.48 -1.9 5,792,598 - PP_5075 0.48 +0.7 5,792,598 - PP_5075 0.48 +0.6 5,792,598 - PP_5075 0.48 -1.2 5,792,598 - PP_5075 0.48 +0.1 5,792,598 - PP_5075 0.48 -0.4 5,792,598 - PP_5075 0.48 +0.7 5,792,602 - PP_5075 0.49 +0.3 5,792,602 - PP_5075 0.49 +0.5 5,792,602 - PP_5075 0.49 +0.2 5,792,627 + PP_5075 0.50 -0.0
Or see this region's nucleotide sequence