Strain Fitness in Pseudomonas putida KT2440 around PP_4812

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
5,474,419	-		PP_4811	0.70	+0.9
5,474,419	-		PP_4811	0.70	-2.6
5,474,419	-		PP_4811	0.70	+0.7
5,474,482	-		PP_4811	0.75	+1.2
5,474,771	-				+1.1
5,474,832	-				+1.7
5,474,833	+				-2.8
5,474,833	+				+0.2
5,474,834	-				+0.7
5,474,834	-				-0.4
5,474,850	+				-1.4
5,474,850	+				-2.3
5,474,850	+				-1.3
5,474,851	-				+0.7
5,474,851	-				-0.3
5,474,899	+				-0.2
5,474,899	+				-0.9
5,474,899	+				-1.9
5,474,953	-				-0.4
5,474,986	-				+1.4
5,474,986	-				-0.1
5,475,049	+				+0.6
5,475,049	+				+0.2
5,475,050	-				-0.9
5,475,050	-				-1.6
5,475,064	+				+0.6
5,475,065	-				-1.0
5,475,065	-				+0.3
5,475,229	+		PP_4812	0.19	-0.7
5,475,230	-		PP_4812	0.19	+0.7
5,475,230	-		PP_4812	0.19	-0.1
5,475,232	+		PP_4812	0.20	-0.4
5,475,249	+		PP_4812	0.22	+0.2
5,475,269	-		PP_4812	0.25	-1.2
5,475,269	-		PP_4812	0.25	-1.5
5,475,313	+		PP_4812	0.32	+1.0
5,475,313	+		PP_4812	0.32	-0.3
5,475,313	+		PP_4812	0.32	-0.5
5,475,313	+		PP_4812	0.32	-0.3
5,475,313	+		PP_4812	0.32	+0.9
5,475,313	+		PP_4812	0.32	-1.3
5,475,313	+		PP_4812	0.32	-0.7
5,475,313	+		PP_4812	0.32	-0.0
5,475,313	+		PP_4812	0.32	-1.0
5,475,314	-		PP_4812	0.32	-0.1
5,475,314	-		PP_4812	0.32	-1.3
5,475,314	-		PP_4812	0.32	+0.1
5,475,314	-		PP_4812	0.32	+0.3
5,475,314	-		PP_4812	0.32	-0.3
5,475,314	-		PP_4812	0.32	-1.1
5,475,314	-		PP_4812	0.32	-0.5
5,475,314	-		PP_4812	0.32	-0.8
5,475,314	-		PP_4812	0.32	-1.7
5,475,314	-		PP_4812	0.32	-1.1
5,475,314	-		PP_4812	0.32	-1.4
5,475,314	-		PP_4812	0.32	-0.2
5,475,314	-		PP_4812	0.32	-0.8
5,475,314	-		PP_4812	0.32	-0.7
5,475,314	-		PP_4812	0.32	+0.2
5,475,314	-		PP_4812	0.32	-0.9
5,475,319	+		PP_4812	0.33	-0.4
5,475,319	+		PP_4812	0.33	-0.3
5,475,319	+		PP_4812	0.33	-0.3
5,475,319	+		PP_4812	0.33	+0.2
5,475,319	+		PP_4812	0.33	-0.1
5,475,319	+		PP_4812	0.33	-0.8
5,475,320	-		PP_4812	0.33	-1.2
5,475,320	-		PP_4812	0.33	+0.2
5,475,320	-		PP_4812	0.33	-0.4
5,475,320	-		PP_4812	0.33	+1.3
5,475,320	-		PP_4812	0.33	-1.2
5,475,322	+		PP_4812	0.33	-1.2
5,475,323	-		PP_4812	0.33	-0.0
5,475,323	-		PP_4812	0.33	-1.2
5,475,394	+		PP_4812	0.44	-1.0
5,475,512	+		PP_4812	0.62	-1.5
5,475,512	+		PP_4812	0.62	-0.1
5,475,512	+		PP_4812	0.62	-1.4
5,475,512	+		PP_4812	0.62	-1.0
5,475,513	-		PP_4812	0.62	-0.3
5,475,513	-		PP_4812	0.62	-0.8
5,475,577	+		PP_4812	0.71	-1.0
5,475,578	-		PP_4812	0.71	-1.4
5,475,685	+		PP_4812	0.87	+0.0
5,475,881	+				-0.6
5,475,881	+				+1.0
5,475,899	-				-1.3
5,475,899	-				+0.8
5,476,002	+		PP_4813	0.18	-0.2
5,476,002	+		PP_4813	0.18	-1.0
5,476,002	+		PP_4813	0.18	+0.2
5,476,003	-		PP_4813	0.18	-0.9
5,476,017	+		PP_4813	0.19	-0.3
5,476,018	-		PP_4813	0.19	+0.5
5,476,018	-		PP_4813	0.19	+0.5
5,476,018	-		PP_4813	0.19	-0.2
5,476,090	-		PP_4813	0.24	+0.3
5,476,101	+		PP_4813	0.25	+2.7
5,476,123	+		PP_4813	0.27	-0.1
5,476,123	+		PP_4813	0.27	+1.2
5,476,243	-		PP_4813	0.36	-0.1
5,476,243	-		PP_4813	0.36	-0.1
5,476,322	-		PP_4813	0.42	+0.3
5,476,322	-		PP_4813	0.42	+0.3
5,476,433	-		PP_4813	0.50	-0.3
5,476,433	-		PP_4813	0.50	+0.0
5,476,449	+		PP_4813	0.51	-0.6
5,476,449	+		PP_4813	0.51	+0.7
5,476,450	-		PP_4813	0.52	+0.1
5,476,450	-		PP_4813	0.52	+0.9
5,476,678	+		PP_4813	0.69	-0.2
5,476,678	+		PP_4813	0.69	+0.1
5,476,679	-		PP_4813	0.69	-0.2
5,476,703	-		PP_4813	0.71	+0.0
5,476,725	+		PP_4813	0.72	-0.8
5,476,725	+		PP_4813	0.72	+0.6
5,476,726	-		PP_4813	0.73	-0.6
5,476,726	-		PP_4813	0.73	-0.5