Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4804 and PP_4805 overlap by 1 nucleotides PP_4805 and PP_4806 overlap by 19 nucleotides
PP_4804: PP_4804 - RlpA-like lipoprotein, at 5,466,844 to 5,467,845
_4804
PP_4805: PP_4805 - membrane-bound lytic murein transglycosylase B, at 5,467,845 to 5,468,891
_4805
PP_4806: PP_4806 - murein transpeptidase factor, at 5,468,873 to 5,469,997
_4806
Position (kb) 5467
5468
5469 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5466.966 kb on + strand, within PP_4804 at 5466.967 kb on - strand, within PP_4804 at 5467.061 kb on - strand, within PP_4804 at 5467.108 kb on + strand, within PP_4804 at 5467.109 kb on - strand, within PP_4804 at 5467.431 kb on - strand, within PP_4804 at 5467.581 kb on - strand, within PP_4804 at 5467.601 kb on + strand, within PP_4804 at 5467.620 kb on + strand, within PP_4804 at 5467.846 kb on + strand at 5467.846 kb on + strand at 5467.847 kb on - strand at 5467.891 kb on - strand at 5467.904 kb on - strand at 5467.904 kb on - strand at 5467.922 kb on - strand at 5467.937 kb on - strand at 5467.937 kb on - strand at 5467.937 kb on - strand at 5467.961 kb on - strand, within PP_4805 at 5468.046 kb on - strand, within PP_4805 at 5468.170 kb on + strand, within PP_4805 at 5468.171 kb on - strand, within PP_4805 at 5468.171 kb on - strand, within PP_4805 at 5468.213 kb on + strand, within PP_4805 at 5468.213 kb on + strand, within PP_4805 at 5468.219 kb on + strand, within PP_4805 at 5468.219 kb on + strand, within PP_4805 at 5468.219 kb on + strand, within PP_4805 at 5468.219 kb on + strand, within PP_4805 at 5468.220 kb on - strand, within PP_4805 at 5468.249 kb on - strand, within PP_4805 at 5468.249 kb on - strand, within PP_4805 at 5468.249 kb on - strand, within PP_4805 at 5468.434 kb on + strand, within PP_4805 at 5468.434 kb on + strand, within PP_4805 at 5468.444 kb on + strand, within PP_4805 at 5468.488 kb on + strand, within PP_4805 at 5468.488 kb on + strand, within PP_4805 at 5468.489 kb on - strand, within PP_4805 at 5468.489 kb on - strand, within PP_4805 at 5468.500 kb on - strand, within PP_4805 at 5468.507 kb on - strand, within PP_4805 at 5468.529 kb on + strand, within PP_4805 at 5468.529 kb on + strand, within PP_4805 at 5468.529 kb on + strand, within PP_4805 at 5468.599 kb on + strand, within PP_4805 at 5468.711 kb on - strand, within PP_4805 at 5468.761 kb on + strand, within PP_4805 at 5468.785 kb on - strand, within PP_4805 at 5468.870 kb on + strand at 5468.870 kb on + strand at 5468.871 kb on - strand at 5468.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 5,466,966 + PP_4804 0.12 -1.3 5,466,967 - PP_4804 0.12 +0.2 5,467,061 - PP_4804 0.22 -1.3 5,467,108 + PP_4804 0.26 -1.8 5,467,109 - PP_4804 0.26 +0.4 5,467,431 - PP_4804 0.59 -1.6 5,467,581 - PP_4804 0.74 +0.2 5,467,601 + PP_4804 0.76 +0.7 5,467,620 + PP_4804 0.77 +1.7 5,467,846 + +0.2 5,467,846 + +1.7 5,467,847 - +0.0 5,467,891 - -1.2 5,467,904 - -1.0 5,467,904 - -2.8 5,467,922 - -1.8 5,467,937 - -1.4 5,467,937 - -2.8 5,467,937 - -2.6 5,467,961 - PP_4805 0.11 -1.5 5,468,046 - PP_4805 0.19 -0.7 5,468,170 + PP_4805 0.31 -0.1 5,468,171 - PP_4805 0.31 -0.6 5,468,171 - PP_4805 0.31 -1.4 5,468,213 + PP_4805 0.35 +0.4 5,468,213 + PP_4805 0.35 -0.7 5,468,219 + PP_4805 0.36 -0.9 5,468,219 + PP_4805 0.36 -1.0 5,468,219 + PP_4805 0.36 -1.6 5,468,219 + PP_4805 0.36 -2.8 5,468,220 - PP_4805 0.36 -0.6 5,468,249 - PP_4805 0.39 -2.2 5,468,249 - PP_4805 0.39 -1.9 5,468,249 - PP_4805 0.39 +1.3 5,468,434 + PP_4805 0.56 -0.8 5,468,434 + PP_4805 0.56 -0.4 5,468,444 + PP_4805 0.57 -2.1 5,468,488 + PP_4805 0.61 -4.2 5,468,488 + PP_4805 0.61 -0.6 5,468,489 - PP_4805 0.62 -2.9 5,468,489 - PP_4805 0.62 -1.6 5,468,500 - PP_4805 0.63 -1.1 5,468,507 - PP_4805 0.63 -0.6 5,468,529 + PP_4805 0.65 -2.6 5,468,529 + PP_4805 0.65 -0.5 5,468,529 + PP_4805 0.65 -0.6 5,468,599 + PP_4805 0.72 -1.0 5,468,711 - PP_4805 0.83 -0.7 5,468,761 + PP_4805 0.87 -1.2 5,468,785 - PP_4805 0.90 -2.0 5,468,870 + -3.4 5,468,870 + -1.3 5,468,871 - +0.1 5,468,871 - -1.2
Or see this region's nucleotide sequence