Strain Fitness in Pseudomonas putida KT2440 around PP_3957

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
4,463,008	+		PP_3955	0.74	+0.2
4,463,008	+		PP_3955	0.74	+0.7
4,463,008	+		PP_3955	0.74	-0.4
4,463,009	-		PP_3955	0.74	-0.4
4,463,040	+		PP_3955	0.75	-0.4
4,463,040	+		PP_3955	0.75	-0.7
4,463,040	+		PP_3955	0.75	+0.4
4,463,040	+		PP_3955	0.75	+0.3
4,463,041	-		PP_3955	0.75	+0.4
4,463,041	-		PP_3955	0.75	-0.6
4,463,041	-		PP_3955	0.75	+0.2
4,463,041	-		PP_3955	0.75	+0.2
4,463,041	-		PP_3955	0.75	-0.6
4,463,122	-		PP_3955	0.79	-0.4
4,463,269	-		PP_3955	0.87	-2.1
4,463,269	-		PP_3955	0.87	+0.6
4,463,269	-		PP_3955	0.87	-1.0
4,463,316	+		PP_3955	0.89	+0.5
4,463,316	+		PP_3955	0.89	+0.6
4,463,316	+		PP_3955	0.89	+0.7
4,463,316	+		PP_3955	0.89	+0.7
4,463,317	-		PP_3955	0.89	+0.4
4,463,317	-		PP_3955	0.89	+0.0
4,463,317	-		PP_3955	0.89	+0.6
4,463,317	-		PP_3955	0.89	+0.2
4,463,317	-		PP_3955	0.89	-1.3
4,463,317	-		PP_3955	0.89	-0.8
4,463,437	+				+0.3
4,463,437	+				-2.1
4,463,502	+				-0.3
4,463,600	-		PP_3956	0.15	-1.2
4,463,649	-		PP_3956	0.27	-0.4
4,463,649	-		PP_3956	0.27	-0.4
4,463,649	-		PP_3956	0.27	-1.0
4,463,673	+		PP_3956	0.33	-0.3
4,463,769	+		PP_3956	0.56	+0.6
4,463,769	+		PP_3956	0.56	+0.1
4,463,770	-		PP_3956	0.56	-0.4
4,463,858	+		PP_3956	0.77	+0.7
4,463,859	-		PP_3956	0.77	-0.3
4,463,866	-		PP_3956	0.79	-2.0
4,463,866	-		PP_3956	0.79	+0.3
4,463,895	+		PP_3956	0.86	+0.7
4,464,000	+				+0.4
4,464,000	+				+1.2
4,464,000	+				+0.6
4,464,000	+				-1.3
4,464,001	-				+0.5
4,464,001	-				+1.2
4,464,001	-				+1.9
4,464,018	+				+1.0
4,464,019	-				+0.8
4,464,019	-				+0.7
4,464,019	-				+1.3
4,464,115	-				-0.1
4,464,166	+				+1.5
4,464,167	-				+2.0
4,464,193	-		PP_3957	0.11	+1.9
4,464,193	-		PP_3957	0.11	+1.6
4,464,233	+		PP_3957	0.13	+1.1
4,464,233	+		PP_3957	0.13	+1.4
4,464,234	-		PP_3957	0.13	+1.1
4,464,332	-		PP_3957	0.18	+0.8
4,464,371	-		PP_3957	0.20	+0.8
4,464,596	+		PP_3957	0.31	+1.6
4,464,596	+		PP_3957	0.31	+1.6
4,464,839	-		PP_3957	0.43	-0.5
4,464,839	-		PP_3957	0.43	+1.5
4,464,839	-		PP_3957	0.43	-0.0
4,464,943	+		PP_3957	0.49	+0.7
4,464,944	-		PP_3957	0.49	+1.1
4,464,944	-		PP_3957	0.49	+0.8
4,464,944	-		PP_3957	0.49	+0.1
4,464,996	+				+0.7
4,465,035	+		PP_3957	0.53	+1.9
4,465,035	+		PP_3957	0.53	+1.7
4,465,035	+		PP_3957	0.53	+1.8
4,465,035	+		PP_3957	0.53	+1.6
4,465,036	-		PP_3957	0.53	+1.7
4,465,036	-		PP_3957	0.53	+1.4
4,465,058	-		PP_3957	0.55	+1.5
4,465,078	-		PP_3957	0.56	+1.1
4,465,094	+		PP_3957	0.56	+0.9
4,465,094	+		PP_3957	0.56	+1.1
4,465,094	+		PP_3957	0.56	+0.5
4,465,094	+		PP_3957	0.56	+1.3
4,465,094	+		PP_3957	0.56	+1.2
4,465,094	+		PP_3957	0.56	+1.7
4,465,095	-		PP_3957	0.56	+0.3
4,465,095	-		PP_3957	0.56	+0.9
4,465,095	-		PP_3957	0.56	+0.6
4,465,095	-		PP_3957	0.56	+1.2
4,465,098	+		PP_3957	0.57	+0.2
4,465,098	+		PP_3957	0.57	+0.6
4,465,098	+		PP_3957	0.57	+1.2
4,465,098	+		PP_3957	0.57	+0.8
4,465,098	+		PP_3957	0.57	+1.9
4,465,099	-		PP_3957	0.57	+0.4
4,465,099	-		PP_3957	0.57	+0.6
4,465,099	-		PP_3957	0.57	+1.6
4,465,120	+		PP_3957	0.58	+1.3
4,465,120	+		PP_3957	0.58	+1.6
4,465,121	-		PP_3957	0.58	+0.6
4,465,121	-		PP_3957	0.58	+1.8
4,465,121	-		PP_3957	0.58	+1.0
4,465,192	+		PP_3957	0.61	+1.5
4,465,320	-		PP_3957	0.68	+1.5
4,465,392	-		PP_3957	0.71	+1.0
4,465,393	+		PP_3957	0.72	+1.0
4,465,394	-		PP_3957	0.72	+1.4
4,465,394	-		PP_3957	0.72	+1.2
4,465,402	-		PP_3957	0.72	+1.4
4,465,402	-		PP_3957	0.72	+0.5
4,465,426	-		PP_3957	0.73	+0.8
4,465,473	+		PP_3957	0.76	+0.2
4,465,500	+		PP_3957	0.77	+0.6
4,465,500	+		PP_3957	0.77	+1.5
4,465,500	+		PP_3957	0.77	+0.8
4,465,500	+		PP_3957	0.77	+1.3
4,465,500	+		PP_3957	0.77	+0.6
4,465,500	+		PP_3957	0.77	+1.4
4,465,501	-		PP_3957	0.77	+1.5
4,465,501	-		PP_3957	0.77	+1.6
4,465,501	-		PP_3957	0.77	+0.7
4,465,501	-		PP_3957	0.77	+1.6
4,465,715	+		PP_3957	0.88	+1.6
4,465,715	+		PP_3957	0.88	+1.2
4,465,715	+		PP_3957	0.88	+1.4
4,465,775	+				+0.2
4,465,776	-				+0.5
4,465,776	-				+0.9
4,465,786	+				+1.1
4,465,788	+				+1.3
4,465,788	+				+1.7
4,465,788	+				+2.0
4,465,788	+				+0.3
4,465,788	+				+0.9
4,465,870	-				+1.6
4,465,892	+				+1.5
4,465,892	+				+1.4
4,465,905	+				+1.5
4,465,954	+				+1.8
4,466,011	+				+2.0
4,466,012	-				-0.2
4,466,012	-				-3.3
4,466,012	-				+0.0
4,466,021	-				+0.2
4,466,168	-				-0.0