Experiment: P. putida PUT10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3692 and PP_5621 are separated by 68 nucleotides PP_5621 and PP_3693 are separated by 49 nucleotides PP_3693 and PP_3694 are separated by 164 nucleotides PP_3694 and PP_3695 overlap by 43 nucleotides
PP_3692: PP_3692 - conserved protein of unknown function, at 4,208,048 to 4,210,723
_3692
PP_5621: PP_5621 - protein of unknown function, at 4,210,792 to 4,211,076
_5621
PP_3693: PP_3693 - putative Transcriptional regulator MvaT, P16 subunit, at 4,211,126 to 4,211,491
_3693
PP_3694: PP_3694 - conserved protein of unknown function, at 4,211,656 to 4,212,615
_3694
PP_3695: PP_3695 - conserved protein of unknown function, at 4,212,573 to 4,213,724
_3695
Position (kb) 4211
4212
4213 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4210.656 kb on + strand at 4210.656 kb on + strand at 4210.690 kb on + strand at 4210.690 kb on + strand at 4210.691 kb on - strand at 4210.721 kb on + strand at 4210.721 kb on + strand at 4210.721 kb on + strand at 4210.722 kb on - strand at 4210.722 kb on - strand at 4210.729 kb on + strand at 4210.730 kb on - strand at 4210.773 kb on - strand at 4210.789 kb on + strand at 4210.789 kb on + strand at 4210.789 kb on + strand at 4210.790 kb on - strand at 4210.790 kb on - strand at 4210.790 kb on - strand at 4210.790 kb on - strand at 4210.790 kb on - strand at 4210.819 kb on + strand at 4210.820 kb on - strand at 4210.820 kb on - strand at 4210.843 kb on - strand, within PP_5621 at 4211.029 kb on - strand, within PP_5621 at 4211.029 kb on - strand, within PP_5621 at 4211.066 kb on + strand at 4211.066 kb on + strand at 4211.066 kb on + strand at 4211.093 kb on - strand at 4211.103 kb on + strand at 4211.116 kb on + strand at 4211.131 kb on + strand at 4211.164 kb on - strand, within PP_3693 at 4211.241 kb on + strand, within PP_3693 at 4211.250 kb on - strand, within PP_3693 at 4211.330 kb on + strand, within PP_3693 at 4211.331 kb on - strand, within PP_3693 at 4211.352 kb on + strand, within PP_3693 at 4211.352 kb on + strand, within PP_3693 at 4211.353 kb on - strand, within PP_3693 at 4211.492 kb on + strand at 4211.492 kb on + strand at 4211.493 kb on - strand at 4211.510 kb on + strand at 4211.511 kb on - strand at 4211.522 kb on + strand at 4211.620 kb on + strand at 4211.620 kb on + strand at 4211.621 kb on - strand at 4211.629 kb on - strand at 4211.629 kb on - strand at 4211.637 kb on + strand at 4211.637 kb on + strand at 4211.645 kb on + strand at 4211.678 kb on - strand at 4211.678 kb on - strand at 4211.678 kb on - strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.683 kb on + strand at 4211.688 kb on - strand at 4211.688 kb on - strand at 4211.748 kb on + strand at 4211.773 kb on - strand, within PP_3694 at 4211.788 kb on - strand, within PP_3694 at 4211.788 kb on - strand, within PP_3694 at 4211.788 kb on - strand, within PP_3694 at 4211.799 kb on + strand, within PP_3694 at 4211.800 kb on - strand, within PP_3694 at 4211.800 kb on - strand, within PP_3694 at 4211.835 kb on + strand, within PP_3694 at 4211.836 kb on - strand, within PP_3694 at 4211.836 kb on - strand, within PP_3694 at 4211.847 kb on - strand, within PP_3694 at 4211.857 kb on + strand, within PP_3694 at 4211.858 kb on - strand, within PP_3694 at 4211.858 kb on - strand, within PP_3694 at 4211.908 kb on + strand, within PP_3694 at 4211.932 kb on + strand, within PP_3694 at 4211.933 kb on - strand, within PP_3694 at 4211.933 kb on - strand, within PP_3694 at 4211.933 kb on - strand, within PP_3694 at 4211.933 kb on - strand, within PP_3694 at 4211.933 kb on - strand, within PP_3694 at 4211.943 kb on + strand, within PP_3694 at 4211.944 kb on - strand, within PP_3694 at 4211.958 kb on - strand, within PP_3694 at 4212.006 kb on + strand, within PP_3694 at 4212.007 kb on - strand, within PP_3694 at 4212.110 kb on + strand, within PP_3694 at 4212.134 kb on + strand, within PP_3694 at 4212.134 kb on + strand, within PP_3694 at 4212.144 kb on + strand, within PP_3694 at 4212.144 kb on + strand, within PP_3694 at 4212.144 kb on + strand, within PP_3694 at 4212.158 kb on - strand, within PP_3694 at 4212.158 kb on - strand, within PP_3694 at 4212.174 kb on + strand, within PP_3694 at 4212.175 kb on - strand, within PP_3694 at 4212.183 kb on + strand, within PP_3694 at 4212.184 kb on - strand, within PP_3694 at 4212.187 kb on + strand, within PP_3694 at 4212.228 kb on + strand, within PP_3694 at 4212.267 kb on + strand, within PP_3694 at 4212.267 kb on + strand, within PP_3694 at 4212.267 kb on + strand, within PP_3694 at 4212.267 kb on + strand, within PP_3694 at 4212.268 kb on - strand, within PP_3694 at 4212.268 kb on - strand, within PP_3694 at 4212.268 kb on - strand, within PP_3694 at 4212.268 kb on - strand, within PP_3694 at 4212.294 kb on - strand, within PP_3694 at 4212.301 kb on + strand, within PP_3694 at 4212.302 kb on - strand, within PP_3694 at 4212.340 kb on + strand, within PP_3694 at 4212.340 kb on + strand, within PP_3694 at 4212.341 kb on - strand, within PP_3694 at 4212.341 kb on - strand, within PP_3694 at 4212.393 kb on - strand, within PP_3694 at 4212.393 kb on - strand, within PP_3694 at 4212.404 kb on + strand, within PP_3694 at 4212.404 kb on + strand, within PP_3694 at 4212.404 kb on + strand, within PP_3694 at 4212.405 kb on - strand, within PP_3694 at 4212.405 kb on - strand, within PP_3694 at 4212.405 kb on - strand, within PP_3694 at 4212.466 kb on + strand, within PP_3694 at 4212.466 kb on + strand, within PP_3694 at 4212.466 kb on + strand, within PP_3694 at 4212.466 kb on + strand, within PP_3694 at 4212.466 kb on + strand, within PP_3694 at 4212.466 kb on + strand, within PP_3694 at 4212.467 kb on - strand, within PP_3694 at 4212.467 kb on - strand, within PP_3694 at 4212.471 kb on - strand, within PP_3694 at 4212.561 kb on + strand at 4212.562 kb on - strand at 4212.564 kb on + strand at 4212.565 kb on - strand at 4212.571 kb on + strand at 4212.616 kb on - strand at 4212.703 kb on - strand, within PP_3695 at 4212.719 kb on + strand, within PP_3695 at 4212.720 kb on - strand, within PP_3695 at 4212.720 kb on - strand, within PP_3695 at 4212.720 kb on - strand, within PP_3695 at 4212.776 kb on + strand, within PP_3695 at 4212.785 kb on + strand, within PP_3695 at 4212.786 kb on - strand, within PP_3695 at 4212.786 kb on - strand, within PP_3695 at 4212.786 kb on - strand, within PP_3695 at 4212.786 kb on - strand, within PP_3695 at 4212.795 kb on + strand, within PP_3695 at 4212.840 kb on - strand, within PP_3695 at 4212.849 kb on - strand, within PP_3695 at 4212.865 kb on + strand, within PP_3695 at 4212.927 kb on + strand, within PP_3695 at 4213.008 kb on + strand, within PP_3695 at 4213.008 kb on + strand, within PP_3695 at 4213.008 kb on + strand, within PP_3695 at 4213.009 kb on - strand, within PP_3695 at 4213.009 kb on - strand, within PP_3695 at 4213.009 kb on - strand, within PP_3695 at 4213.009 kb on - strand, within PP_3695 at 4213.009 kb on - strand, within PP_3695 at 4213.052 kb on + strand, within PP_3695 at 4213.103 kb on + strand, within PP_3695 at 4213.104 kb on - strand, within PP_3695 at 4213.104 kb on - strand, within PP_3695 at 4213.111 kb on + strand, within PP_3695 at 4213.159 kb on + strand, within PP_3695 at 4213.215 kb on - strand, within PP_3695 at 4213.215 kb on - strand, within PP_3695 at 4213.218 kb on + strand, within PP_3695 at 4213.219 kb on - strand, within PP_3695 at 4213.219 kb on - strand, within PP_3695 at 4213.272 kb on + strand, within PP_3695 at 4213.272 kb on + strand, within PP_3695 at 4213.285 kb on - strand, within PP_3695 at 4213.319 kb on + strand at 4213.319 kb on + strand at 4213.319 kb on + strand, within PP_3695 at 4213.320 kb on - strand, within PP_3695 at 4213.402 kb on + strand, within PP_3695 at 4213.402 kb on + strand, within PP_3695 at 4213.403 kb on - strand, within PP_3695 at 4213.403 kb on - strand, within PP_3695 at 4213.403 kb on - strand, within PP_3695 at 4213.403 kb on - strand, within PP_3695 at 4213.403 kb on - strand, within PP_3695 at 4213.413 kb on + strand, within PP_3695 at 4213.413 kb on + strand, within PP_3695 at 4213.414 kb on - strand, within PP_3695 at 4213.414 kb on - strand, within PP_3695 at 4213.424 kb on + strand, within PP_3695 at 4213.425 kb on - strand, within PP_3695 at 4213.425 kb on - strand, within PP_3695 at 4213.425 kb on - strand, within PP_3695 at 4213.425 kb on - strand, within PP_3695 at 4213.425 kb on - strand, within PP_3695 at 4213.425 kb on - strand, within PP_3695 at 4213.437 kb on - strand, within PP_3695 at 4213.476 kb on + strand, within PP_3695 at 4213.485 kb on + strand, within PP_3695 at 4213.604 kb on + strand, within PP_3695 at 4213.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT10 MOI 1 remove 4,210,656 + -0.8 4,210,656 + -0.4 4,210,690 + +0.0 4,210,690 + -1.7 4,210,691 - -0.2 4,210,721 + -1.3 4,210,721 + +0.8 4,210,721 + -0.5 4,210,722 - +0.4 4,210,722 - +0.7 4,210,729 + -1.9 4,210,730 - +1.7 4,210,773 - +0.5 4,210,789 + -1.1 4,210,789 + -1.6 4,210,789 + +0.3 4,210,790 - +1.0 4,210,790 - +0.4 4,210,790 - +1.0 4,210,790 - +1.2 4,210,790 - +0.8 4,210,819 + -1.2 4,210,820 - +0.0 4,210,820 - +0.6 4,210,843 - PP_5621 0.18 -0.4 4,211,029 - PP_5621 0.83 -0.1 4,211,029 - PP_5621 0.83 +0.5 4,211,066 + -0.1 4,211,066 + +0.2 4,211,066 + +1.3 4,211,093 - -0.1 4,211,103 + +1.2 4,211,116 + +0.8 4,211,131 + +0.3 4,211,164 - PP_3693 0.10 +3.2 4,211,241 + PP_3693 0.31 +0.6 4,211,250 - PP_3693 0.34 +0.5 4,211,330 + PP_3693 0.56 +1.8 4,211,331 - PP_3693 0.56 +0.1 4,211,352 + PP_3693 0.62 +0.3 4,211,352 + PP_3693 0.62 +0.7 4,211,353 - PP_3693 0.62 +0.7 4,211,492 + +1.0 4,211,492 + -0.9 4,211,493 - +0.3 4,211,510 + +0.9 4,211,511 - +2.3 4,211,522 + +0.6 4,211,620 + +0.1 4,211,620 + +1.7 4,211,621 - -2.9 4,211,629 - -3.6 4,211,629 - -3.6 4,211,637 + +0.3 4,211,637 + +0.4 4,211,645 + +1.0 4,211,678 - -2.8 4,211,678 - -0.2 4,211,678 - -3.8 4,211,683 + +1.0 4,211,683 + +0.3 4,211,683 + +1.4 4,211,688 - -4.1 4,211,688 - -1.9 4,211,748 + +0.4 4,211,773 - PP_3694 0.12 -1.3 4,211,788 - PP_3694 0.14 -3.0 4,211,788 - PP_3694 0.14 -4.3 4,211,788 - PP_3694 0.14 -2.6 4,211,799 + PP_3694 0.15 -0.3 4,211,800 - PP_3694 0.15 -0.8 4,211,800 - PP_3694 0.15 -2.1 4,211,835 + PP_3694 0.19 -0.4 4,211,836 - PP_3694 0.19 -2.6 4,211,836 - PP_3694 0.19 -4.6 4,211,847 - PP_3694 0.20 -0.9 4,211,857 + PP_3694 0.21 -0.8 4,211,858 - PP_3694 0.21 -3.1 4,211,858 - PP_3694 0.21 -2.4 4,211,908 + PP_3694 0.26 -0.5 4,211,932 + PP_3694 0.29 +0.3 4,211,933 - PP_3694 0.29 -2.6 4,211,933 - PP_3694 0.29 -4.4 4,211,933 - PP_3694 0.29 -0.7 4,211,933 - PP_3694 0.29 -2.0 4,211,933 - PP_3694 0.29 -1.8 4,211,943 + PP_3694 0.30 +0.5 4,211,944 - PP_3694 0.30 -2.2 4,211,958 - PP_3694 0.31 -2.6 4,212,006 + PP_3694 0.36 +1.5 4,212,007 - PP_3694 0.37 -0.5 4,212,110 + PP_3694 0.47 +0.6 4,212,134 + PP_3694 0.50 +0.3 4,212,134 + PP_3694 0.50 +1.2 4,212,144 + PP_3694 0.51 +0.3 4,212,144 + PP_3694 0.51 -0.1 4,212,144 + PP_3694 0.51 +0.7 4,212,158 - PP_3694 0.52 -1.4 4,212,158 - PP_3694 0.52 -1.1 4,212,174 + PP_3694 0.54 +0.7 4,212,175 - PP_3694 0.54 -1.6 4,212,183 + PP_3694 0.55 -0.1 4,212,184 - PP_3694 0.55 -3.4 4,212,187 + PP_3694 0.55 +1.1 4,212,228 + PP_3694 0.60 -0.7 4,212,267 + PP_3694 0.64 +1.1 4,212,267 + PP_3694 0.64 +0.0 4,212,267 + PP_3694 0.64 -0.5 4,212,267 + PP_3694 0.64 +0.0 4,212,268 - PP_3694 0.64 -1.1 4,212,268 - PP_3694 0.64 -0.7 4,212,268 - PP_3694 0.64 -1.6 4,212,268 - PP_3694 0.64 -3.4 4,212,294 - PP_3694 0.66 -2.3 4,212,301 + PP_3694 0.67 +1.0 4,212,302 - PP_3694 0.67 -2.6 4,212,340 + PP_3694 0.71 +1.1 4,212,340 + PP_3694 0.71 +0.9 4,212,341 - PP_3694 0.71 -1.6 4,212,341 - PP_3694 0.71 -2.6 4,212,393 - PP_3694 0.77 -3.5 4,212,393 - PP_3694 0.77 -1.8 4,212,404 + PP_3694 0.78 -0.4 4,212,404 + PP_3694 0.78 +0.4 4,212,404 + PP_3694 0.78 -1.3 4,212,405 - PP_3694 0.78 -1.5 4,212,405 - PP_3694 0.78 -1.5 4,212,405 - PP_3694 0.78 -1.9 4,212,466 + PP_3694 0.84 +0.4 4,212,466 + PP_3694 0.84 -0.8 4,212,466 + PP_3694 0.84 -0.8 4,212,466 + PP_3694 0.84 -0.2 4,212,466 + PP_3694 0.84 -0.3 4,212,466 + PP_3694 0.84 -1.5 4,212,467 - PP_3694 0.84 +0.2 4,212,467 - PP_3694 0.84 -1.6 4,212,471 - PP_3694 0.85 -0.1 4,212,561 + -0.5 4,212,562 - +0.4 4,212,564 + +0.7 4,212,565 - -1.1 4,212,571 + +0.2 4,212,616 - -0.6 4,212,703 - PP_3695 0.11 -0.8 4,212,719 + PP_3695 0.13 -0.9 4,212,720 - PP_3695 0.13 -1.5 4,212,720 - PP_3695 0.13 -0.0 4,212,720 - PP_3695 0.13 -0.4 4,212,776 + PP_3695 0.18 +0.3 4,212,785 + PP_3695 0.18 -1.1 4,212,786 - PP_3695 0.18 -0.7 4,212,786 - PP_3695 0.18 -1.5 4,212,786 - PP_3695 0.18 -0.7 4,212,786 - PP_3695 0.18 -1.4 4,212,795 + PP_3695 0.19 +2.1 4,212,840 - PP_3695 0.23 -1.1 4,212,849 - PP_3695 0.24 -2.5 4,212,865 + PP_3695 0.25 +0.8 4,212,927 + PP_3695 0.31 -0.5 4,213,008 + PP_3695 0.38 -1.0 4,213,008 + PP_3695 0.38 +1.0 4,213,008 + PP_3695 0.38 -0.5 4,213,009 - PP_3695 0.38 +0.9 4,213,009 - PP_3695 0.38 -0.4 4,213,009 - PP_3695 0.38 -1.7 4,213,009 - PP_3695 0.38 -0.6 4,213,009 - PP_3695 0.38 -0.7 4,213,052 + PP_3695 0.42 +0.5 4,213,103 + PP_3695 0.46 +0.6 4,213,104 - PP_3695 0.46 -0.4 4,213,104 - PP_3695 0.46 -0.9 4,213,111 + PP_3695 0.47 -0.2 4,213,159 + PP_3695 0.51 -1.3 4,213,215 - PP_3695 0.56 -0.5 4,213,215 - PP_3695 0.56 -0.5 4,213,218 + PP_3695 0.56 +0.3 4,213,219 - PP_3695 0.56 -1.3 4,213,219 - PP_3695 0.56 -1.0 4,213,272 + PP_3695 0.61 -0.2 4,213,272 + PP_3695 0.61 -0.0 4,213,285 - PP_3695 0.62 -1.4 4,213,319 + +2.8 4,213,319 + +1.8 4,213,319 + PP_3695 0.65 -0.2 4,213,320 - PP_3695 0.65 +0.3 4,213,402 + PP_3695 0.72 +1.5 4,213,402 + PP_3695 0.72 +0.8 4,213,403 - PP_3695 0.72 -0.4 4,213,403 - PP_3695 0.72 -0.6 4,213,403 - PP_3695 0.72 +0.4 4,213,403 - PP_3695 0.72 -1.3 4,213,403 - PP_3695 0.72 -0.4 4,213,413 + PP_3695 0.73 +0.3 4,213,413 + PP_3695 0.73 -0.4 4,213,414 - PP_3695 0.73 +0.3 4,213,414 - PP_3695 0.73 +0.2 4,213,424 + PP_3695 0.74 +0.9 4,213,425 - PP_3695 0.74 +0.9 4,213,425 - PP_3695 0.74 +0.2 4,213,425 - PP_3695 0.74 -0.7 4,213,425 - PP_3695 0.74 +0.1 4,213,425 - PP_3695 0.74 -0.8 4,213,425 - PP_3695 0.74 -0.6 4,213,437 - PP_3695 0.75 -0.2 4,213,476 + PP_3695 0.78 -1.0 4,213,485 + PP_3695 0.79 +0.6 4,213,604 + PP_3695 0.89 +0.9 4,213,611 - +0.1
Or see this region's nucleotide sequence