Strain Fitness in Pseudomonas putida KT2440 around PP_3614

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
4,105,995	+		PP_3613	0.24	+0.1
4,105,995	+		PP_3613	0.24	-0.5
4,105,995	+		PP_3613	0.24	+0.4
4,106,070	+		PP_3613	0.30	+0.2
4,106,071	-		PP_3613	0.30	-1.6
4,106,071	-		PP_3613	0.30	+0.1
4,106,076	+		PP_3613	0.31	+0.1
4,106,077	-		PP_3613	0.31	+0.4
4,106,088	+		PP_3613	0.32	+0.0
4,106,088	+		PP_3613	0.32	+1.2
4,106,088	+		PP_3613	0.32	+0.2
4,106,088	+		PP_3613	0.32	+0.2
4,106,088	+		PP_3613	0.32	-0.0
4,106,088	+		PP_3613	0.32	-1.1
4,106,088	+		PP_3613	0.32	+0.3
4,106,088	+		PP_3613	0.32	-1.8
4,106,089	-		PP_3613	0.32	-2.6
4,106,089	-		PP_3613	0.32	-0.1
4,106,089	-		PP_3613	0.32	+0.9
4,106,089	-		PP_3613	0.32	+0.0
4,106,089	-		PP_3613	0.32	+0.1
4,106,089	-		PP_3613	0.32	+0.2
4,106,089	-		PP_3613	0.32	+0.1
4,106,089	-		PP_3613	0.32	+0.7
4,106,106	-		PP_3613	0.33	+0.3
4,106,106	-		PP_3613	0.33	-0.5
4,106,212	+		PP_3613	0.41	-0.2
4,106,337	+		PP_3613	0.51	+0.8
4,106,337	+		PP_3613	0.51	+0.3
4,106,337	+		PP_3613	0.51	-0.9
4,106,338	-		PP_3613	0.51	+0.2
4,106,338	-		PP_3613	0.51	+0.2
4,106,338	-		PP_3613	0.51	+0.6
4,106,338	-		PP_3613	0.51	-0.2
4,106,338	-		PP_3613	0.51	+0.3
4,106,486	+		PP_3613	0.62	+1.2
4,106,486	+		PP_3613	0.62	-0.5
4,106,486	+		PP_3613	0.62	+0.1
4,106,487	-		PP_3613	0.62	+1.3
4,106,487	-		PP_3613	0.62	-0.7
4,106,490	+		PP_3613	0.63	-0.0
4,106,490	+		PP_3613	0.63	-2.0
4,106,491	-		PP_3613	0.63	-0.4
4,106,491	-		PP_3613	0.63	+0.5
4,106,491	-		PP_3613	0.63	+2.8
4,106,508	+		PP_3613	0.64	+0.5
4,106,555	+		PP_3613	0.68	-1.3
4,106,556	-		PP_3613	0.68	+0.4
4,106,556	-		PP_3613	0.68	+0.2
4,106,562	+		PP_3613	0.68	+0.6
4,106,562	+		PP_3613	0.68	-0.9
4,106,562	+		PP_3613	0.68	-0.6
4,106,563	-		PP_3613	0.68	-2.4
4,106,931	-				-0.2
4,106,950	+				-0.2
4,106,950	+				-0.0
4,106,950	+				+0.2
4,106,951	-				-0.2
4,106,951	-				-0.1
4,107,143	+		PP_3614	0.41	-1.3
4,107,143	+		PP_3614	0.41	-1.4
4,107,143	+		PP_3614	0.41	-0.5
4,107,144	-		PP_3614	0.41	-0.9
4,107,144	-		PP_3614	0.41	-0.6
4,107,282	-		PP_3614	0.73	-0.2
4,107,364	-				-0.3
4,107,450	+				+1.3
4,107,450	+				-0.8
4,107,495	-				-0.8
4,107,513	-		PP_3615	0.14	-0.8
4,107,516	+		PP_3615	0.14	+0.3
4,107,520	+		PP_3615	0.16	+0.5
4,107,559	+		PP_3615	0.26	-0.1
4,107,560	-		PP_3615	0.26	-0.7
4,107,560	-		PP_3615	0.26	-0.1
4,107,560	-		PP_3615	0.26	-1.7
4,107,581	-		PP_3615	0.31	-0.0
4,107,581	-		PP_3615	0.31	+0.5
4,107,656	-		PP_3615	0.51	+0.2
4,107,735	+				+2.8
4,107,735	+		PP_3615	0.71	+0.6
4,107,735	+		PP_3615	0.71	+0.6
4,107,736	-		PP_3615	0.71	+0.7
4,107,736	-		PP_3615	0.71	-0.7
4,107,736	-		PP_3615	0.71	-0.4
4,107,736	-		PP_3615	0.71	+0.2
4,107,736	-		PP_3615	0.71	+2.1
4,107,736	-		PP_3615	0.71	-0.7
4,107,768	+		PP_3615	0.80	+0.5
4,107,769	-		PP_3615	0.80	-1.5
4,107,769	-		PP_3615	0.80	+0.8
4,107,850	+				+0.8
4,107,850	+				+0.3
4,107,853	-				+0.4
4,107,878	+				-0.2
4,107,907	-				-1.0
4,107,923	-				+0.1
4,107,923	-				+0.2
4,107,926	+				-2.9
4,108,036	+				-1.6
4,108,053	-				-2.6
4,108,086	+				-0.7
4,108,380	+				+2.6