Strain Fitness in Pseudomonas putida KT2440 around PP_3180

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
3,603,827	+				-1.9
3,603,827	+				-0.1
3,603,827	+				-0.7
3,603,827	+				-1.3
3,603,828	-				-0.7
3,603,828	-				-1.2
3,603,828	-				-1.5
3,603,828	-				+1.2
3,604,291	+		PP_3179	0.60	-0.7
3,604,292	-		PP_3179	0.60	-1.3
3,604,292	-		PP_3179	0.60	-2.2
3,604,292	-		PP_3179	0.60	-0.5
3,604,302	-		PP_3179	0.61	-1.0
3,604,347	-		PP_3179	0.66	-1.4
3,604,347	-		PP_3179	0.66	-1.4
3,604,846	+				-0.8
3,604,956	-		PP_3180	0.17	+0.0
3,605,033	+		PP_3180	0.24	-0.5
3,605,033	+		PP_3180	0.24	-0.1
3,605,034	-		PP_3180	0.24	-2.7
3,605,045	-		PP_3180	0.25	-0.1
3,605,244	-		PP_3180	0.44	-0.7
3,605,320	+		PP_3180	0.52	+0.1
3,605,321	-		PP_3180	0.52	-1.0
3,605,457	-		PP_3180	0.65	-0.5
3,605,468	+		PP_3180	0.66	-0.5
3,605,607	-		PP_3180	0.79	-0.6
3,605,621	+		PP_3180	0.81	+1.0
3,605,649	+		PP_3180	0.83	-0.1
3,605,769	-				-0.0
3,605,769	-				-1.2
3,605,769	-				-1.4
3,605,769	-				-0.7
3,605,769	-				+0.4
3,605,769	-				-0.9
3,605,769	-				-1.0
3,605,819	+				-0.9
3,605,820	-				-0.9
3,605,884	+				+0.0
3,605,884	+				-1.2
3,605,884	+				-1.3
3,605,885	-				+0.7
3,605,920	+		PP_3181	0.11	+0.1
3,605,920	+		PP_3181	0.11	-2.4
3,605,920	+		PP_3181	0.11	-0.2
3,605,921	-		PP_3181	0.12	-1.7
3,605,996	+		PP_3181	0.19	+0.1
3,605,998	+		PP_3181	0.20	+0.2
3,605,998	+		PP_3181	0.20	-0.3
3,605,998	+		PP_3181	0.20	+0.1
3,605,998	+		PP_3181	0.20	-0.7
3,605,999	-		PP_3181	0.20	-0.5
3,606,502	-		PP_3181	0.73	-1.1
3,606,593	+		PP_3181	0.82	+0.3
3,606,629	-		PP_3181	0.86	-0.7
3,606,639	-		PP_3181	0.87	+0.9
3,606,703	+				-0.4
3,606,703	+				-0.0
3,606,704	-				+0.6
3,606,704	-				-0.4
3,606,742	+				+0.1
3,606,743	-				+0.2
3,606,743	-				+0.2
3,606,795	-				-0.5