Strain Fitness in Pseudomonas putida KT2440 around PP_2913

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
3,311,821	+				-0.5
3,311,821	+				+1.6
3,311,822	-				+1.7
3,311,822	-				-1.0
3,311,824	+				-0.1
3,311,825	-				-2.9
3,311,860	-		PP_2912	0.11	+0.5
3,311,860	-		PP_2912	0.11	+0.2
3,311,884	+		PP_2912	0.13	+1.1
3,311,901	+		PP_2912	0.15	-0.1
3,311,902	-		PP_2912	0.15	+0.2
3,311,904	-		PP_2912	0.15	+0.4
3,311,962	+		PP_2912	0.22	-1.0
3,311,962	+		PP_2912	0.22	+0.2
3,311,963	-		PP_2912	0.22	+0.6
3,312,099	+		PP_2912	0.37	+0.7
3,312,178	+		PP_2912	0.46	+0.5
3,312,178	+		PP_2912	0.46	+1.3
3,312,178	+		PP_2912	0.46	-0.6
3,312,179	-		PP_2912	0.46	-0.8
3,312,533	+		PP_2912	0.86	+1.0
3,312,533	+		PP_2912	0.86	+0.1
3,312,534	-		PP_2912	0.86	+0.8
3,312,535	+		PP_2912	0.86	-0.1
3,312,657	+				-1.0
3,312,658	-				+0.2
3,312,658	-				+0.5
3,312,662	+				+1.7
3,312,662	+				+0.6
3,312,663	-				+0.6
3,312,663	-				-0.1
3,312,786	+				-2.0
3,312,786	+				-1.0
3,312,786	+				+0.0
3,312,786	+				-0.3
3,312,786	+				+0.3
3,312,791	+				+0.3
3,312,791	+				-1.3
3,312,791	+				+0.4
3,312,791	+				+0.6
3,312,793	+				-0.5
3,313,789	+				+0.5
3,313,790	-				+0.7
3,313,898	-				-0.2
3,313,898	-				+0.1
3,313,902	-				-2.0
3,313,915	-				+0.8
3,313,926	+				-0.8
3,314,084	+				-2.6
3,314,085	-				+0.7
3,314,085	-				-1.9
3,314,086	+				-0.4
3,314,087	-				+0.3
3,314,087	-				+1.5
3,314,101	+				-0.5
3,314,102	-				-0.6
3,314,303	+		PP_2914	0.23	+0.3
3,314,311	+		PP_2914	0.24	+0.3
3,314,312	-		PP_2914	0.24	-0.7
3,314,312	-		PP_2914	0.24	-0.3
3,314,325	+		PP_2914	0.25	+0.7
3,314,389	+		PP_2914	0.29	+0.4
3,314,390	-		PP_2914	0.29	+1.1
3,314,390	-		PP_2914	0.29	-0.8
3,314,486	+		PP_2914	0.35	-0.3
3,314,486	+		PP_2914	0.35	-1.0
3,314,780	-		PP_2914	0.55	+1.7
3,314,780	-		PP_2914	0.55	-0.1
3,314,782	+		PP_2914	0.55	-0.1
3,314,782	+		PP_2914	0.55	-0.0
3,314,782	+		PP_2914	0.55	+0.4
3,314,783	-		PP_2914	0.55	-0.8
3,314,783	-		PP_2914	0.55	+0.3
3,314,783	-		PP_2914	0.55	+0.4
3,314,783	-		PP_2914	0.55	+1.0
3,314,794	-		PP_2914	0.56	-1.1
3,314,794	-		PP_2914	0.56	-1.5