Strain Fitness in Pseudomonas putida KT2440 around PP_2461

Experiment: P. putida PUT10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT10 MOI 1
2,806,573	+				-1.8
2,806,574	-				-0.2
2,806,610	+				+0.1
2,806,611	-				-0.3
2,806,611	-				+0.8
2,806,847	-		PP_2460	0.23	-0.5
2,806,926	+				+1.6
2,806,926	-		PP_2460	0.31	-0.1
2,806,976	-		PP_2460	0.36	+0.3
2,806,976	-		PP_2460	0.36	+1.6
2,807,164	+		PP_2460	0.55	+2.3
2,807,218	+		PP_2460	0.61	-1.5
2,807,329	+		PP_2460	0.72	+0.9
2,807,329	+		PP_2460	0.72	+0.2
2,807,329	+		PP_2460	0.72	+0.8
2,807,329	+		PP_2460	0.72	+0.5
2,807,330	-		PP_2460	0.73	+0.1
2,807,330	-		PP_2460	0.73	+0.3
2,807,353	+		PP_2460	0.75	-0.0
2,807,353	+		PP_2460	0.75	+1.4
2,807,354	-		PP_2460	0.75	+0.3
2,807,354	-		PP_2460	0.75	+0.4
2,807,360	+		PP_2460	0.76	-0.7
2,807,360	+		PP_2460	0.76	-0.8
2,807,361	-		PP_2460	0.76	+0.9
2,807,399	-		PP_2460	0.80	+0.5
2,807,405	+		PP_2460	0.80	-0.1
2,807,405	+		PP_2460	0.80	+0.7
2,807,610	+		PP_2461	0.20	-0.8
2,807,901	+				+0.1
2,807,908	-				+1.6
2,807,921	+				+0.2
2,807,921	+				-0.5
2,807,922	-				+0.2
2,807,922	-				+1.5
2,807,922	-				+0.3
2,807,922	-				+0.9
2,808,073	-		PP_2462	0.19	+1.6
2,808,073	-		PP_2462	0.19	+2.0
2,808,431	+				+1.1
2,808,431	+				+1.1
2,808,431	+				+0.7
2,808,431	+				+0.5
2,808,432	-				+1.5
2,808,480	+				+0.7
2,808,567	+				+1.9
2,808,567	+				+2.2
2,808,568	-				+2.2
2,808,693	-		PP_2463	0.55	+2.6